Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF858 and GFF859 are separated by 16 nucleotides GFF859 and GFF860 are separated by 237 nucleotides GFF860 and GFF861 overlap by 17 nucleotides
GFF858 - Copper tolerance protein, at 165,128 to 165,622
GFF858
GFF859 - Lactoylglutathione lyase (EC 4.4.1.5), at 165,639 to 166,031
GFF859
GFF860 - Cocaine esterase (EC 3.1.1.-), at 166,269 to 168,110
GFF860
GFF861 - S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase, at 168,094 to 169,617
GFF861
Position (kb) 166
167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 165.572 kb on + strand, within GFF858 at 165.573 kb on - strand at 165.694 kb on + strand, within GFF859 at 165.922 kb on + strand, within GFF859 at 165.922 kb on + strand, within GFF859 at 165.923 kb on - strand, within GFF859 at 165.923 kb on - strand, within GFF859 at 166.019 kb on - strand at 166.019 kb on - strand at 166.172 kb on + strand at 166.173 kb on - strand at 166.422 kb on + strand at 166.422 kb on + strand at 166.455 kb on + strand, within GFF860 at 166.456 kb on - strand, within GFF860 at 166.566 kb on + strand, within GFF860 at 166.567 kb on - strand, within GFF860 at 166.716 kb on + strand, within GFF860 at 167.130 kb on + strand, within GFF860 at 167.131 kb on - strand, within GFF860 at 167.131 kb on - strand, within GFF860 at 167.133 kb on + strand, within GFF860 at 167.211 kb on + strand, within GFF860 at 167.239 kb on - strand, within GFF860 at 167.472 kb on + strand, within GFF860 at 167.472 kb on + strand, within GFF860 at 167.473 kb on - strand, within GFF860 at 167.473 kb on - strand, within GFF860 at 167.473 kb on - strand, within GFF860 at 167.478 kb on + strand, within GFF860 at 167.595 kb on + strand, within GFF860 at 167.596 kb on - strand, within GFF860 at 167.619 kb on + strand, within GFF860 at 167.620 kb on - strand, within GFF860 at 168.095 kb on + strand at 168.218 kb on + strand at 168.219 kb on - strand at 168.219 kb on - strand at 168.344 kb on + strand, within GFF861 at 168.345 kb on - strand, within GFF861
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 165,572 + GFF858 0.90 -1.0 165,573 - -1.0 165,694 + GFF859 0.14 -0.7 165,922 + GFF859 0.72 -0.4 165,922 + GFF859 0.72 -0.4 165,923 - GFF859 0.72 +1.0 165,923 - GFF859 0.72 -0.4 166,019 - -0.3 166,019 - -0.0 166,172 + +0.3 166,173 - -1.1 166,422 + -0.1 166,422 + +0.8 166,455 + GFF860 0.10 -0.5 166,456 - GFF860 0.10 -2.0 166,566 + GFF860 0.16 -0.7 166,567 - GFF860 0.16 -0.2 166,716 + GFF860 0.24 +0.3 167,130 + GFF860 0.47 +2.0 167,131 - GFF860 0.47 -0.4 167,131 - GFF860 0.47 +1.0 167,133 + GFF860 0.47 -0.4 167,211 + GFF860 0.51 -1.4 167,239 - GFF860 0.53 -1.6 167,472 + GFF860 0.65 +1.2 167,472 + GFF860 0.65 -1.2 167,473 - GFF860 0.65 -2.5 167,473 - GFF860 0.65 -1.1 167,473 - GFF860 0.65 +0.1 167,478 + GFF860 0.66 -0.4 167,595 + GFF860 0.72 -0.9 167,596 - GFF860 0.72 -0.7 167,619 + GFF860 0.73 -1.6 167,620 - GFF860 0.73 -0.5 168,095 + -0.9 168,218 + +1.0 168,219 - -0.2 168,219 - -0.6 168,344 + GFF861 0.16 +0.2 168,345 - GFF861 0.16 -0.6
Or see this region's nucleotide sequence