Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF841 and GFF842 overlap by 4 nucleotides GFF842 and GFF843 are separated by 138 nucleotides
GFF841 - zinc finger, SWIM-type, at 147,094 to 148,800
GFF841
GFF842 - hypothetical protein, at 148,797 to 151,982
GFF842
GFF843 - no description, at 152,121 to 153,215
GFF843
Position (kb) 148
149
150
151
152 Strain fitness (log2 ratio) -2
-1
0
1 at 148.199 kb on + strand, within GFF841 at 148.199 kb on + strand, within GFF841 at 148.317 kb on - strand, within GFF841 at 148.317 kb on - strand, within GFF841 at 148.415 kb on + strand, within GFF841 at 148.415 kb on + strand, within GFF841 at 148.415 kb on + strand, within GFF841 at 148.416 kb on - strand, within GFF841 at 148.416 kb on - strand, within GFF841 at 148.416 kb on - strand, within GFF841 at 148.416 kb on - strand, within GFF841 at 148.592 kb on + strand, within GFF841 at 148.593 kb on - strand, within GFF841 at 148.788 kb on - strand at 148.927 kb on + strand at 148.927 kb on + strand at 148.927 kb on + strand at 148.927 kb on + strand at 148.928 kb on - strand at 149.092 kb on + strand at 149.093 kb on - strand at 149.203 kb on + strand, within GFF842 at 149.203 kb on + strand, within GFF842 at 149.203 kb on + strand, within GFF842 at 149.203 kb on + strand, within GFF842 at 149.204 kb on - strand, within GFF842 at 149.937 kb on + strand, within GFF842 at 150.268 kb on + strand, within GFF842 at 150.304 kb on + strand, within GFF842 at 150.305 kb on - strand, within GFF842 at 150.898 kb on + strand, within GFF842 at 150.919 kb on + strand, within GFF842 at 150.967 kb on + strand, within GFF842 at 151.084 kb on + strand, within GFF842 at 151.084 kb on + strand, within GFF842 at 151.514 kb on - strand, within GFF842 at 151.548 kb on + strand, within GFF842 at 151.549 kb on - strand, within GFF842 at 151.549 kb on - strand, within GFF842 at 151.590 kb on - strand, within GFF842 at 151.823 kb on - strand at 151.823 kb on - strand at 151.823 kb on - strand at 152.072 kb on - strand at 152.072 kb on - strand at 152.072 kb on - strand at 152.140 kb on + strand at 152.140 kb on + strand at 152.140 kb on + strand at 152.140 kb on + strand at 152.141 kb on - strand at 152.141 kb on - strand at 152.190 kb on + strand at 152.382 kb on + strand, within GFF843 at 152.382 kb on + strand, within GFF843 at 152.383 kb on - strand, within GFF843 at 152.383 kb on - strand, within GFF843 at 152.581 kb on + strand, within GFF843 at 152.581 kb on + strand, within GFF843 at 152.843 kb on + strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,199 + GFF841 0.65 -0.7 148,199 + GFF841 0.65 -0.0 148,317 - GFF841 0.72 -1.4 148,317 - GFF841 0.72 +0.7 148,415 + GFF841 0.77 -0.3 148,415 + GFF841 0.77 -0.2 148,415 + GFF841 0.77 -1.0 148,416 - GFF841 0.77 +0.4 148,416 - GFF841 0.77 -0.3 148,416 - GFF841 0.77 -1.0 148,416 - GFF841 0.77 -0.9 148,592 + GFF841 0.88 +0.3 148,593 - GFF841 0.88 -0.3 148,788 - -1.4 148,927 + +0.2 148,927 + +0.0 148,927 + -0.4 148,927 + -0.2 148,928 - -1.0 149,092 + -0.4 149,093 - -1.0 149,203 + GFF842 0.13 -0.5 149,203 + GFF842 0.13 -0.7 149,203 + GFF842 0.13 -0.7 149,203 + GFF842 0.13 -0.7 149,204 - GFF842 0.13 -0.9 149,937 + GFF842 0.36 +1.1 150,268 + GFF842 0.46 +0.4 150,304 + GFF842 0.47 -1.1 150,305 - GFF842 0.47 -2.2 150,898 + GFF842 0.66 -1.0 150,919 + GFF842 0.67 -1.1 150,967 + GFF842 0.68 -1.3 151,084 + GFF842 0.72 -0.4 151,084 + GFF842 0.72 -0.5 151,514 - GFF842 0.85 -0.4 151,548 + GFF842 0.86 +0.4 151,549 - GFF842 0.86 -0.2 151,549 - GFF842 0.86 -0.9 151,590 - GFF842 0.88 +0.6 151,823 - -2.3 151,823 - -0.3 151,823 - -0.9 152,072 - -0.8 152,072 - -1.4 152,072 - -1.0 152,140 + -1.0 152,140 + -0.7 152,140 + +0.7 152,140 + +0.0 152,141 - -0.4 152,141 - -0.2 152,190 + +0.2 152,382 + GFF843 0.24 +0.1 152,382 + GFF843 0.24 +0.6 152,383 - GFF843 0.24 -0.2 152,383 - GFF843 0.24 -0.6 152,581 + GFF843 0.42 -0.5 152,581 + GFF843 0.42 -0.2 152,843 + GFF843 0.66 +0.1 152,845 - GFF843 0.66 -0.1 152,845 - GFF843 0.66 -0.4 152,845 - GFF843 0.66 -0.2 152,845 - GFF843 0.66 -0.7 152,845 - GFF843 0.66 -0.6
Or see this region's nucleotide sequence