Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7410 and GFF7411 overlap by 4 nucleotides GFF7411 and GFF7412 overlap by 4 nucleotides GFF7412 and GFF7413 overlap by 4 nucleotides
GFF7410 - no description, at 338 to 574
GFF7410
GFF7411 - no description, at 571 to 1,416
GFF7411
GFF7412 - no description, at 1,413 to 1,997
GFF7412
GFF7413 - no description, at 1,994 to 2,542
GFF7413
Position (kb) 0
1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 0.057 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.104 kb on - strand at 0.120 kb on + strand at 0.138 kb on + strand at 0.138 kb on + strand at 0.138 kb on + strand at 0.138 kb on + strand at 0.139 kb on - strand at 0.139 kb on - strand at 0.139 kb on - strand at 0.154 kb on + strand at 0.162 kb on + strand at 0.162 kb on + strand at 0.163 kb on - strand at 0.163 kb on - strand at 0.188 kb on + strand at 0.188 kb on + strand at 0.189 kb on - strand at 0.189 kb on - strand at 0.303 kb on + strand at 0.304 kb on - strand at 0.304 kb on - strand at 0.326 kb on + strand at 0.326 kb on + strand at 0.326 kb on + strand at 0.326 kb on + strand at 0.326 kb on + strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.446 kb on + strand, within GFF7410 at 0.446 kb on + strand, within GFF7410 at 0.581 kb on + strand at 0.581 kb on + strand at 0.581 kb on + strand at 0.582 kb on - strand at 0.582 kb on - strand at 0.582 kb on - strand at 0.601 kb on + strand at 0.601 kb on + strand at 0.601 kb on + strand at 0.602 kb on - strand at 0.602 kb on - strand at 0.655 kb on + strand at 0.655 kb on + strand at 0.655 kb on + strand at 0.655 kb on + strand at 0.655 kb on + strand at 0.656 kb on - strand, within GFF7411 at 0.656 kb on - strand, within GFF7411 at 0.656 kb on - strand, within GFF7411 at 0.675 kb on + strand, within GFF7411 at 0.675 kb on + strand, within GFF7411 at 0.675 kb on + strand, within GFF7411 at 0.675 kb on + strand, within GFF7411 at 0.676 kb on - strand, within GFF7411 at 0.886 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.928 kb on - strand, within GFF7411 at 0.982 kb on + strand, within GFF7411 at 0.982 kb on + strand, within GFF7411 at 1.097 kb on + strand, within GFF7411 at 1.108 kb on + strand, within GFF7411 at 1.109 kb on - strand, within GFF7411 at 1.109 kb on - strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.184 kb on - strand, within GFF7411 at 1.184 kb on - strand, within GFF7411 at 1.473 kb on + strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.482 kb on + strand, within GFF7412 at 1.482 kb on + strand, within GFF7412 at 1.599 kb on + strand, within GFF7412 at 1.599 kb on + strand, within GFF7412 at 1.599 kb on + strand, within GFF7412 at 1.599 kb on + strand, within GFF7412 at 1.600 kb on - strand, within GFF7412 at 1.600 kb on - strand, within GFF7412 at 1.600 kb on - strand, within GFF7412 at 1.600 kb on - strand, within GFF7412 at 1.671 kb on + strand, within GFF7412 at 1.671 kb on + strand, within GFF7412 at 1.671 kb on + strand, within GFF7412 at 1.671 kb on + strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.708 kb on - strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.863 kb on + strand, within GFF7412 at 1.863 kb on + strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.902 kb on + strand, within GFF7412 at 1.902 kb on + strand, within GFF7412 at 1.903 kb on - strand, within GFF7412 at 1.965 kb on - strand at 1.965 kb on - strand at 2.127 kb on + strand, within GFF7413 at 2.128 kb on - strand, within GFF7413 at 2.128 kb on - strand, within GFF7413 at 2.128 kb on - strand, within GFF7413 at 2.255 kb on + strand, within GFF7413 at 2.255 kb on + strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.330 kb on + strand, within GFF7413 at 2.330 kb on + strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 57 + -0.3 73 + +1.8 73 + -0.5 73 + -0.5 73 + -2.3 73 + -1.3 73 + -0.5 73 + +0.4 73 + -0.2 73 + -0.5 104 - -0.2 120 + -1.1 138 + -0.5 138 + +0.3 138 + -0.9 138 + -1.1 139 - +0.8 139 - -0.7 139 - -0.8 154 + -0.6 162 + -0.4 162 + -0.7 163 - -0.7 163 - -0.5 188 + +0.2 188 + -0.3 189 - +1.4 189 - -0.3 303 + +1.4 304 - -0.2 304 - -0.4 326 + -0.2 326 + -0.2 326 + -0.9 326 + +0.2 326 + -2.3 327 - +0.1 327 - -0.3 327 - -0.0 327 - -0.1 327 - +0.8 327 - -0.7 327 - -0.9 327 - -0.2 327 - -1.6 327 - -0.6 368 + GFF7410 0.13 -1.5 368 + GFF7410 0.13 +0.2 368 + GFF7410 0.13 +0.3 368 + GFF7410 0.13 -1.4 368 + GFF7410 0.13 +0.1 368 + GFF7410 0.13 -0.1 368 + GFF7410 0.13 -0.1 368 + GFF7410 0.13 -0.6 368 + GFF7410 0.13 -0.7 368 + GFF7410 0.13 -0.2 369 - GFF7410 0.13 +0.0 369 - GFF7410 0.13 -0.1 369 - GFF7410 0.13 -0.4 369 - GFF7410 0.13 -1.3 369 - GFF7410 0.13 +1.0 369 - GFF7410 0.13 +0.1 369 - GFF7410 0.13 -0.1 369 - GFF7410 0.13 +0.0 369 - GFF7410 0.13 -0.1 369 - GFF7410 0.13 +0.7 369 - GFF7410 0.13 +0.6 446 + GFF7410 0.46 +0.1 446 + GFF7410 0.46 -0.2 581 + -0.0 581 + -1.3 581 + +0.6 582 - -0.6 582 - -1.2 582 - +1.2 601 + -0.4 601 + -0.2 601 + +0.1 602 - -0.7 602 - -1.0 655 + -0.7 655 + -0.1 655 + -0.2 655 + +0.3 655 + +0.8 656 - GFF7411 0.10 -0.5 656 - GFF7411 0.10 -1.6 656 - GFF7411 0.10 -0.5 675 + GFF7411 0.12 +0.6 675 + GFF7411 0.12 -0.2 675 + GFF7411 0.12 -0.1 675 + GFF7411 0.12 +0.2 676 - GFF7411 0.12 -1.3 886 + GFF7411 0.37 -0.1 927 + GFF7411 0.42 -0.6 927 + GFF7411 0.42 -1.2 927 + GFF7411 0.42 -0.4 927 + GFF7411 0.42 -0.4 927 + GFF7411 0.42 -0.0 928 - GFF7411 0.42 -0.1 982 + GFF7411 0.49 -2.0 982 + GFF7411 0.49 -0.4 1,097 + GFF7411 0.62 -0.8 1,108 + GFF7411 0.63 +0.1 1,109 - GFF7411 0.64 +1.4 1,109 - GFF7411 0.64 -0.6 1,174 + GFF7411 0.71 +0.5 1,174 + GFF7411 0.71 -0.3 1,174 + GFF7411 0.71 -0.2 1,174 + GFF7411 0.71 -0.4 1,174 + GFF7411 0.71 +0.6 1,174 + GFF7411 0.71 +0.4 1,174 + GFF7411 0.71 -1.3 1,174 + GFF7411 0.71 +1.4 1,174 + GFF7411 0.71 -0.3 1,174 + GFF7411 0.71 -0.0 1,175 - GFF7411 0.71 -0.2 1,175 - GFF7411 0.71 -0.5 1,175 - GFF7411 0.71 -1.1 1,175 - GFF7411 0.71 +0.4 1,175 - GFF7411 0.71 -0.5 1,184 - GFF7411 0.72 -0.8 1,184 - GFF7411 0.72 -0.8 1,473 + GFF7412 0.10 -1.4 1,474 - GFF7412 0.10 -0.6 1,474 - GFF7412 0.10 -0.5 1,474 - GFF7412 0.10 -0.2 1,474 - GFF7412 0.10 +0.4 1,474 - GFF7412 0.10 -0.4 1,482 + GFF7412 0.12 +0.5 1,482 + GFF7412 0.12 -0.8 1,599 + GFF7412 0.32 -0.6 1,599 + GFF7412 0.32 +0.8 1,599 + GFF7412 0.32 -0.2 1,599 + GFF7412 0.32 -0.9 1,600 - GFF7412 0.32 -0.9 1,600 - GFF7412 0.32 +0.4 1,600 - GFF7412 0.32 -0.3 1,600 - GFF7412 0.32 -0.7 1,671 + GFF7412 0.44 -0.2 1,671 + GFF7412 0.44 -0.5 1,671 + GFF7412 0.44 -0.3 1,671 + GFF7412 0.44 -0.3 1,672 - GFF7412 0.44 -0.1 1,672 - GFF7412 0.44 -0.5 1,672 - GFF7412 0.44 -0.4 1,672 - GFF7412 0.44 -0.1 1,672 - GFF7412 0.44 -2.8 1,672 - GFF7412 0.44 -0.7 1,672 - GFF7412 0.44 +0.1 1,672 - GFF7412 0.44 -2.2 1,672 - GFF7412 0.44 -0.3 1,672 - GFF7412 0.44 -0.3 1,707 + GFF7412 0.50 -0.5 1,707 + GFF7412 0.50 -0.1 1,707 + GFF7412 0.50 -0.4 1,707 + GFF7412 0.50 +0.7 1,707 + GFF7412 0.50 +0.4 1,708 - GFF7412 0.50 +0.5 1,758 + GFF7412 0.59 -0.6 1,758 + GFF7412 0.59 +0.7 1,758 + GFF7412 0.59 -0.2 1,758 + GFF7412 0.59 -1.0 1,758 + GFF7412 0.59 -0.2 1,758 + GFF7412 0.59 -1.9 1,758 + GFF7412 0.59 -0.0 1,758 + GFF7412 0.59 -0.6 1,759 - GFF7412 0.59 -1.0 1,759 - GFF7412 0.59 -0.1 1,759 - GFF7412 0.59 -0.2 1,759 - GFF7412 0.59 +0.2 1,759 - GFF7412 0.59 +0.1 1,759 - GFF7412 0.59 +0.9 1,863 + GFF7412 0.77 -0.5 1,863 + GFF7412 0.77 +0.8 1,864 - GFF7412 0.77 -0.2 1,864 - GFF7412 0.77 -0.1 1,864 - GFF7412 0.77 -0.6 1,864 - GFF7412 0.77 -1.2 1,864 - GFF7412 0.77 -0.4 1,864 - GFF7412 0.77 +0.1 1,864 - GFF7412 0.77 +0.1 1,902 + GFF7412 0.84 +0.1 1,902 + GFF7412 0.84 +0.1 1,903 - GFF7412 0.84 +1.2 1,965 - -0.8 1,965 - -0.5 2,127 + GFF7413 0.24 -0.7 2,128 - GFF7413 0.24 +1.4 2,128 - GFF7413 0.24 +0.5 2,128 - GFF7413 0.24 -1.8 2,255 + GFF7413 0.48 -0.6 2,255 + GFF7413 0.48 -2.5 2,256 - GFF7413 0.48 -0.2 2,256 - GFF7413 0.48 +0.0 2,256 - GFF7413 0.48 -0.8 2,256 - GFF7413 0.48 -0.5 2,256 - GFF7413 0.48 -0.7 2,330 + GFF7413 0.61 +1.2 2,330 + GFF7413 0.61 -0.3 2,331 - GFF7413 0.61 -0.6 2,331 - GFF7413 0.61 -0.7 2,331 - GFF7413 0.61 -1.0 2,331 - GFF7413 0.61 +3.4 2,331 - GFF7413 0.61 -0.8 2,331 - GFF7413 0.61 -0.8 2,331 - GFF7413 0.61 +0.2 2,331 - GFF7413 0.61 +0.5 2,331 - GFF7413 0.61 -0.9
Or see this region's nucleotide sequence