Strain Fitness in Variovorax sp. SCN45 around GFF6968

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6967 and GFF6968 are separated by 847 nucleotidesGFF6968 and GFF6969 are separated by 277 nucleotidesGFF6969 and GFF6970 are separated by 126 nucleotides GFF6967 - Universal stress protein family, at 41,059 to 41,502 GFF6967 GFF6968 - no description, at 42,350 to 43,948 GFF6968 GFF6969 - hypothetical protein, at 44,226 to 44,558 GFF6969 GFF6970 - Chromate transport protein ChrA, at 44,685 to 45,905 GFF6970 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1at 41.466 kb on - strandat 41.522 kb on + strandat 41.522 kb on + strandat 41.522 kb on + strandat 41.523 kb on - strandat 41.635 kb on - strandat 41.635 kb on - strandat 41.766 kb on + strandat 41.771 kb on + strandat 41.851 kb on + strandat 41.998 kb on - strandat 42.045 kb on - strandat 42.045 kb on - strandat 42.119 kb on + strandat 42.136 kb on - strandat 42.136 kb on - strandat 42.282 kb on - strandat 42.314 kb on + strandat 42.419 kb on + strandat 42.450 kb on + strandat 42.451 kb on - strandat 42.462 kb on + strandat 42.462 kb on + strandat 42.464 kb on + strandat 42.909 kb on - strand, within GFF6968at 42.936 kb on + strand, within GFF6968at 42.985 kb on + strand, within GFF6968at 42.986 kb on - strand, within GFF6968at 42.986 kb on - strand, within GFF6968at 43.041 kb on + strand, within GFF6968at 43.041 kb on + strand, within GFF6968at 43.041 kb on + strand, within GFF6968at 43.041 kb on + strand, within GFF6968at 43.042 kb on - strand, within GFF6968at 43.044 kb on + strand, within GFF6968at 43.044 kb on + strand, within GFF6968at 43.092 kb on - strand, within GFF6968at 43.180 kb on - strand, within GFF6968at 43.302 kb on - strand, within GFF6968at 43.336 kb on + strand, within GFF6968at 43.336 kb on + strand, within GFF6968at 43.337 kb on - strand, within GFF6968at 43.337 kb on - strand, within GFF6968at 43.337 kb on - strand, within GFF6968at 43.338 kb on + strand, within GFF6968at 43.339 kb on - strand, within GFF6968at 43.393 kb on + strand, within GFF6968at 43.394 kb on - strand, within GFF6968at 43.394 kb on - strand, within GFF6968at 43.394 kb on - strand, within GFF6968at 43.629 kb on + strand, within GFF6968at 43.633 kb on + strand, within GFF6968at 43.675 kb on + strand, within GFF6968at 43.676 kb on - strand, within GFF6968at 43.698 kb on + strand, within GFF6968at 43.699 kb on - strand, within GFF6968at 44.005 kb on + strandat 44.006 kb on - strandat 44.190 kb on + strandat 44.249 kb on + strandat 44.357 kb on - strand, within GFF6969at 44.411 kb on - strand, within GFF6969at 44.452 kb on + strand, within GFF6969at 44.452 kb on + strand, within GFF6969at 44.453 kb on - strand, within GFF6969at 44.453 kb on - strand, within GFF6969at 44.611 kb on + strandat 44.622 kb on + strandat 44.653 kb on + strandat 44.654 kb on - strandat 44.654 kb on - strandat 44.673 kb on + strandat 44.674 kb on - strandat 44.674 kb on - strandat 44.674 kb on - strandat 44.674 kb on - strandat 44.752 kb on + strandat 44.752 kb on + strandat 44.753 kb on - strandat 44.753 kb on - strandat 44.753 kb on - strandat 44.753 kb on - strandat 44.859 kb on + strand, within GFF6970

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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41,466 - -0.2
41,522 + +0.1
41,522 + -0.5
41,522 + -0.2
41,523 - -0.4
41,635 - -0.1
41,635 - +0.0
41,766 + -0.8
41,771 + -1.1
41,851 + +0.1
41,998 - +0.1
42,045 - -0.4
42,045 - -0.1
42,119 + -0.0
42,136 - -0.7
42,136 - -0.6
42,282 - -0.4
42,314 + -0.3
42,419 + +0.0
42,450 + -0.8
42,451 - +0.6
42,462 + -0.2
42,462 + -0.4
42,464 + -1.7
42,909 - GFF6968 0.35 -0.9
42,936 + GFF6968 0.37 -0.8
42,985 + GFF6968 0.40 -1.1
42,986 - GFF6968 0.40 -0.9
42,986 - GFF6968 0.40 -1.2
43,041 + GFF6968 0.43 -2.4
43,041 + GFF6968 0.43 -1.5
43,041 + GFF6968 0.43 -1.8
43,041 + GFF6968 0.43 +0.2
43,042 - GFF6968 0.43 +0.1
43,044 + GFF6968 0.43 -0.6
43,044 + GFF6968 0.43 -1.5
43,092 - GFF6968 0.46 -0.5
43,180 - GFF6968 0.52 -0.1
43,302 - GFF6968 0.60 +0.0
43,336 + GFF6968 0.62 +0.4
43,336 + GFF6968 0.62 -0.5
43,337 - GFF6968 0.62 -0.3
43,337 - GFF6968 0.62 +1.4
43,337 - GFF6968 0.62 -1.4
43,338 + GFF6968 0.62 -0.6
43,339 - GFF6968 0.62 +0.1
43,393 + GFF6968 0.65 +0.2
43,394 - GFF6968 0.65 -0.1
43,394 - GFF6968 0.65 -0.3
43,394 - GFF6968 0.65 -0.2
43,629 + GFF6968 0.80 -1.8
43,633 + GFF6968 0.80 -0.2
43,675 + GFF6968 0.83 -0.3
43,676 - GFF6968 0.83 +0.6
43,698 + GFF6968 0.84 -0.3
43,699 - GFF6968 0.84 -0.4
44,005 + +1.4
44,006 - -1.7
44,190 + -0.4
44,249 + -0.0
44,357 - GFF6969 0.39 -0.7
44,411 - GFF6969 0.56 +0.3
44,452 + GFF6969 0.68 -0.2
44,452 + GFF6969 0.68 +0.7
44,453 - GFF6969 0.68 -1.5
44,453 - GFF6969 0.68 -0.2
44,611 + -0.6
44,622 + +0.8
44,653 + -0.5
44,654 - +0.8
44,654 - -0.9
44,673 + -0.4
44,674 - +0.7
44,674 - +1.2
44,674 - +0.5
44,674 - -0.0
44,752 + +0.6
44,752 + -0.4
44,753 - +0.2
44,753 - -0.8
44,753 - -0.3
44,753 - -0.2
44,859 + GFF6970 0.14 +0.4

Or see this region's nucleotide sequence