Strain Fitness in Variovorax sp. SCN45 around GFF6753

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6753 and GFF6754 overlap by 4 nucleotidesGFF6754 and GFF6755 overlap by 4 nucleotides GFF6753 - hypothetical protein, at 191 to 2,137 GFF6753 GFF6754 - no description, at 2,134 to 2,649 GFF6754 GFF6755 - hypothetical protein, at 2,646 to 3,860 GFF6755 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.099 kb on + strandat 0.099 kb on + strandat 0.099 kb on + strandat 0.099 kb on + strandat 0.099 kb on + strandat 0.100 kb on - strandat 0.100 kb on - strandat 0.100 kb on - strandat 0.100 kb on - strandat 0.100 kb on - strandat 0.100 kb on - strandat 0.100 kb on - strandat 0.100 kb on - strandat 0.101 kb on + strandat 0.101 kb on + strandat 0.102 kb on - strandat 0.118 kb on + strandat 0.119 kb on - strandat 0.119 kb on - strandat 0.173 kb on - strandat 0.461 kb on + strand, within GFF6753at 0.461 kb on + strand, within GFF6753at 0.461 kb on + strand, within GFF6753at 0.462 kb on - strand, within GFF6753at 0.462 kb on - strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.502 kb on + strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.503 kb on - strand, within GFF6753at 0.666 kb on + strand, within GFF6753at 0.666 kb on + strand, within GFF6753at 0.666 kb on + strand, within GFF6753at 0.666 kb on + strand, within GFF6753at 0.828 kb on + strand, within GFF6753at 0.828 kb on + strand, within GFF6753at 0.828 kb on + strand, within GFF6753at 0.828 kb on + strand, within GFF6753at 0.828 kb on + strand, within GFF6753at 0.828 kb on + strand, within GFF6753at 0.829 kb on - strand, within GFF6753at 0.829 kb on - strand, within GFF6753at 0.829 kb on - strand, within GFF6753at 0.829 kb on - strand, within GFF6753at 0.829 kb on - strand, within GFF6753at 0.829 kb on - strand, within GFF6753at 0.829 kb on - strand, within GFF6753at 0.829 kb on - strand, within GFF6753at 1.038 kb on + strand, within GFF6753at 1.038 kb on + strand, within GFF6753at 1.038 kb on + strand, within GFF6753at 1.039 kb on - strand, within GFF6753at 1.259 kb on + strand, within GFF6753at 1.260 kb on - strand, within GFF6753at 1.348 kb on + strand, within GFF6753at 1.399 kb on + strand, within GFF6753at 1.545 kb on + strand, within GFF6753at 1.545 kb on + strand, within GFF6753at 1.546 kb on - strand, within GFF6753at 1.546 kb on - strand, within GFF6753at 1.572 kb on + strand, within GFF6753at 1.572 kb on + strand, within GFF6753at 1.572 kb on + strand, within GFF6753at 1.740 kb on + strand, within GFF6753at 1.740 kb on + strand, within GFF6753at 1.741 kb on - strand, within GFF6753at 1.741 kb on - strand, within GFF6753at 1.851 kb on + strand, within GFF6753at 1.851 kb on + strand, within GFF6753at 1.851 kb on + strand, within GFF6753at 1.851 kb on + strand, within GFF6753at 1.852 kb on - strand, within GFF6753at 1.852 kb on - strand, within GFF6753at 1.852 kb on - strand, within GFF6753at 1.852 kb on - strand, within GFF6753at 1.931 kb on + strand, within GFF6753at 1.931 kb on + strand, within GFF6753at 1.932 kb on - strand, within GFF6753at 1.932 kb on - strand, within GFF6753at 1.974 kb on - strandat 1.974 kb on - strandat 1.974 kb on - strandat 2.001 kb on + strandat 2.002 kb on - strandat 2.002 kb on - strandat 2.002 kb on - strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.256 kb on - strand, within GFF6754at 2.256 kb on - strand, within GFF6754at 2.256 kb on - strand, within GFF6754at 2.256 kb on - strand, within GFF6754at 2.578 kb on + strand, within GFF6754at 2.745 kb on + strandat 2.745 kb on + strandat 2.745 kb on + strandat 2.745 kb on + strandat 2.745 kb on + strandat 2.746 kb on - strandat 2.817 kb on + strand, within GFF6755at 2.817 kb on + strand, within GFF6755at 2.817 kb on + strand, within GFF6755at 2.818 kb on - strand, within GFF6755at 2.818 kb on - strand, within GFF6755at 2.890 kb on + strand, within GFF6755at 2.890 kb on + strand, within GFF6755at 2.890 kb on + strand, within GFF6755at 2.891 kb on - strand, within GFF6755at 2.909 kb on + strand, within GFF6755at 2.909 kb on + strand, within GFF6755at 2.926 kb on + strand, within GFF6755at 2.927 kb on - strand, within GFF6755at 2.998 kb on + strand, within GFF6755at 2.998 kb on + strand, within GFF6755at 2.998 kb on + strand, within GFF6755at 2.998 kb on + strand, within GFF6755at 3.057 kb on - strand, within GFF6755at 3.057 kb on - strand, within GFF6755at 3.057 kb on - strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.071 kb on + strand, within GFF6755at 3.085 kb on - strand, within GFF6755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
75 + -0.5
75 + -0.2
75 + -1.0
75 + -2.0
75 + -0.0
99 + -0.4
99 + -0.2
99 + +0.8
99 + +0.9
99 + +0.8
100 - -0.5
100 - +0.3
100 - +0.1
100 - -0.3
100 - -1.0
100 - -0.2
100 - -0.3
100 - -1.7
101 + +0.3
101 + +0.3
102 - -0.1
118 + +0.9
119 - -0.6
119 - +0.6
173 - -0.6
461 + GFF6753 0.14 +1.3
461 + GFF6753 0.14 -0.8
461 + GFF6753 0.14 -2.4
462 - GFF6753 0.14 -0.1
462 - GFF6753 0.14 +0.4
502 + GFF6753 0.16 -0.6
502 + GFF6753 0.16 -0.6
502 + GFF6753 0.16 -0.6
502 + GFF6753 0.16 +0.9
502 + GFF6753 0.16 -0.1
502 + GFF6753 0.16 +0.1
502 + GFF6753 0.16 -1.4
502 + GFF6753 0.16 -0.0
502 + GFF6753 0.16 -0.8
502 + GFF6753 0.16 +0.2
502 + GFF6753 0.16 -0.5
502 + GFF6753 0.16 -0.4
502 + GFF6753 0.16 -0.6
502 + GFF6753 0.16 -1.7
502 + GFF6753 0.16 -2.0
502 + GFF6753 0.16 +0.0
502 + GFF6753 0.16 +0.4
502 + GFF6753 0.16 +0.2
502 + GFF6753 0.16 -0.6
502 + GFF6753 0.16 -1.1
502 + GFF6753 0.16 -0.4
502 + GFF6753 0.16 +0.8
502 + GFF6753 0.16 -0.5
502 + GFF6753 0.16 -0.2
502 + GFF6753 0.16 -0.0
503 - GFF6753 0.16 +0.8
503 - GFF6753 0.16 -0.3
503 - GFF6753 0.16 -1.9
503 - GFF6753 0.16 -0.2
503 - GFF6753 0.16 -0.1
503 - GFF6753 0.16 -0.3
503 - GFF6753 0.16 -0.5
503 - GFF6753 0.16 -0.9
503 - GFF6753 0.16 -0.8
503 - GFF6753 0.16 -0.3
503 - GFF6753 0.16 +0.4
503 - GFF6753 0.16 +0.9
503 - GFF6753 0.16 -0.9
503 - GFF6753 0.16 -1.9
503 - GFF6753 0.16 -0.9
503 - GFF6753 0.16 +0.1
503 - GFF6753 0.16 +0.7
503 - GFF6753 0.16 -0.2
503 - GFF6753 0.16 -1.9
503 - GFF6753 0.16 -0.2
503 - GFF6753 0.16 -0.6
666 + GFF6753 0.24 -0.4
666 + GFF6753 0.24 +0.7
666 + GFF6753 0.24 -1.7
666 + GFF6753 0.24 -0.5
828 + GFF6753 0.33 +0.4
828 + GFF6753 0.33 +0.5
828 + GFF6753 0.33 -0.2
828 + GFF6753 0.33 -1.1
828 + GFF6753 0.33 +0.5
828 + GFF6753 0.33 -1.1
829 - GFF6753 0.33 -0.2
829 - GFF6753 0.33 -0.4
829 - GFF6753 0.33 -0.8
829 - GFF6753 0.33 +0.0
829 - GFF6753 0.33 +1.0
829 - GFF6753 0.33 +1.4
829 - GFF6753 0.33 -1.3
829 - GFF6753 0.33 -0.7
1,038 + GFF6753 0.44 -0.4
1,038 + GFF6753 0.44 -1.0
1,038 + GFF6753 0.44 -0.3
1,039 - GFF6753 0.44 -1.5
1,259 + GFF6753 0.55 -2.4
1,260 - GFF6753 0.55 -0.8
1,348 + GFF6753 0.59 -1.3
1,399 + GFF6753 0.62 -1.1
1,545 + GFF6753 0.70 -0.6
1,545 + GFF6753 0.70 +0.5
1,546 - GFF6753 0.70 -0.6
1,546 - GFF6753 0.70 -1.4
1,572 + GFF6753 0.71 -0.6
1,572 + GFF6753 0.71 +0.5
1,572 + GFF6753 0.71 +0.2
1,740 + GFF6753 0.80 -0.1
1,740 + GFF6753 0.80 -0.2
1,741 - GFF6753 0.80 -0.4
1,741 - GFF6753 0.80 +0.1
1,851 + GFF6753 0.85 -1.2
1,851 + GFF6753 0.85 +0.6
1,851 + GFF6753 0.85 -0.2
1,851 + GFF6753 0.85 +0.2
1,852 - GFF6753 0.85 +0.0
1,852 - GFF6753 0.85 +0.0
1,852 - GFF6753 0.85 +0.4
1,852 - GFF6753 0.85 +0.7
1,931 + GFF6753 0.89 -2.6
1,931 + GFF6753 0.89 -0.2
1,932 - GFF6753 0.89 -0.3
1,932 - GFF6753 0.89 +0.1
1,974 - -0.1
1,974 - -0.2
1,974 - -0.6
2,001 + -0.0
2,002 - +0.8
2,002 - -0.4
2,002 - +1.1
2,109 + -0.2
2,109 + +0.0
2,109 + -0.9
2,109 + +0.3
2,109 + -0.8
2,109 + -0.3
2,109 + -0.4
2,110 - +0.2
2,110 - -0.7
2,110 - -0.8
2,110 - -0.3
2,110 - -1.4
2,110 - +0.3
2,255 + GFF6754 0.23 +1.0
2,255 + GFF6754 0.23 +0.1
2,255 + GFF6754 0.23 -0.5
2,255 + GFF6754 0.23 -1.0
2,255 + GFF6754 0.23 +0.4
2,255 + GFF6754 0.23 -0.2
2,256 - GFF6754 0.24 -0.4
2,256 - GFF6754 0.24 +1.4
2,256 - GFF6754 0.24 -0.3
2,256 - GFF6754 0.24 -0.3
2,578 + GFF6754 0.86 +0.0
2,745 + -0.1
2,745 + -0.9
2,745 + -0.6
2,745 + -0.3
2,745 + -0.2
2,746 - -0.4
2,817 + GFF6755 0.14 -0.9
2,817 + GFF6755 0.14 +0.7
2,817 + GFF6755 0.14 -0.1
2,818 - GFF6755 0.14 +0.7
2,818 - GFF6755 0.14 -0.9
2,890 + GFF6755 0.20 -1.5
2,890 + GFF6755 0.20 -0.3
2,890 + GFF6755 0.20 -0.4
2,891 - GFF6755 0.20 +0.2
2,909 + GFF6755 0.22 +0.1
2,909 + GFF6755 0.22 +0.2
2,926 + GFF6755 0.23 +0.8
2,927 - GFF6755 0.23 -0.8
2,998 + GFF6755 0.29 -1.4
2,998 + GFF6755 0.29 +0.3
2,998 + GFF6755 0.29 -0.0
2,998 + GFF6755 0.29 -0.7
3,057 - GFF6755 0.34 -0.1
3,057 - GFF6755 0.34 +0.8
3,057 - GFF6755 0.34 -0.1
3,058 + GFF6755 0.34 -0.3
3,058 + GFF6755 0.34 +0.2
3,058 + GFF6755 0.34 -0.3
3,058 + GFF6755 0.34 +0.6
3,058 + GFF6755 0.34 +1.2
3,058 + GFF6755 0.34 -1.2
3,058 + GFF6755 0.34 +0.4
3,058 + GFF6755 0.34 -1.4
3,058 + GFF6755 0.34 -0.0
3,058 + GFF6755 0.34 -0.3
3,058 + GFF6755 0.34 -1.4
3,059 - GFF6755 0.34 +0.6
3,059 - GFF6755 0.34 -0.8
3,059 - GFF6755 0.34 -0.4
3,059 - GFF6755 0.34 -0.7
3,059 - GFF6755 0.34 -1.7
3,059 - GFF6755 0.34 -0.0
3,059 - GFF6755 0.34 -0.9
3,059 - GFF6755 0.34 -0.9
3,059 - GFF6755 0.34 -0.2
3,059 - GFF6755 0.34 -0.8
3,059 - GFF6755 0.34 +1.0
3,059 - GFF6755 0.34 +0.5
3,059 - GFF6755 0.34 -0.7
3,059 - GFF6755 0.34 -0.1
3,059 - GFF6755 0.34 +0.2
3,071 + GFF6755 0.35 -0.2
3,085 - GFF6755 0.36 -0.2

Or see this region's nucleotide sequence