Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6742 and GFF6743 are separated by 60 nucleotides GFF6743 and GFF6744 are separated by 20 nucleotides GFF6744 and GFF6745 are separated by 177 nucleotides
GFF6742 - NAD(P)H-flavin oxidoreductase, at 56,369 to 56,977
GFF6742
GFF6743 - no description, at 57,038 to 57,673
GFF6743
GFF6744 - hypothetical protein, at 57,694 to 58,497
GFF6744
GFF6745 - hypothetical protein, at 58,675 to 59,538
GFF6745
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1 at 56.798 kb on + strand, within GFF6742 at 56.798 kb on + strand, within GFF6742 at 56.798 kb on + strand, within GFF6742 at 56.799 kb on - strand, within GFF6742 at 56.799 kb on - strand, within GFF6742 at 56.799 kb on - strand, within GFF6742 at 57.051 kb on + strand at 57.051 kb on + strand at 57.052 kb on - strand at 57.052 kb on - strand at 57.052 kb on - strand at 57.052 kb on - strand at 57.153 kb on + strand, within GFF6743 at 57.186 kb on + strand, within GFF6743 at 57.186 kb on + strand, within GFF6743 at 57.187 kb on - strand, within GFF6743 at 57.187 kb on - strand, within GFF6743 at 57.187 kb on - strand, within GFF6743 at 57.249 kb on + strand, within GFF6743 at 57.249 kb on + strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.426 kb on + strand, within GFF6743 at 57.427 kb on - strand, within GFF6743 at 57.427 kb on - strand, within GFF6743 at 57.427 kb on - strand, within GFF6743 at 57.429 kb on + strand, within GFF6743 at 57.429 kb on + strand, within GFF6743 at 57.429 kb on + strand, within GFF6743 at 57.429 kb on + strand, within GFF6743 at 57.430 kb on - strand, within GFF6743 at 57.430 kb on - strand, within GFF6743 at 57.430 kb on - strand, within GFF6743 at 57.438 kb on + strand, within GFF6743 at 57.631 kb on - strand at 57.852 kb on - strand, within GFF6744 at 57.852 kb on - strand, within GFF6744 at 57.899 kb on + strand, within GFF6744 at 57.947 kb on + strand, within GFF6744 at 57.947 kb on + strand, within GFF6744 at 58.538 kb on + strand at 58.556 kb on + strand at 58.557 kb on - strand at 58.676 kb on + strand at 58.676 kb on + strand at 58.676 kb on + strand at 58.684 kb on + strand at 58.684 kb on + strand at 58.685 kb on - strand at 58.685 kb on - strand at 58.899 kb on - strand, within GFF6745 at 58.925 kb on + strand, within GFF6745 at 58.926 kb on - strand, within GFF6745 at 58.926 kb on - strand, within GFF6745 at 58.926 kb on - strand, within GFF6745 at 59.057 kb on + strand, within GFF6745 at 59.159 kb on + strand, within GFF6745 at 59.160 kb on - strand, within GFF6745 at 59.220 kb on - strand, within GFF6745 at 59.220 kb on - strand, within GFF6745 at 59.249 kb on + strand, within GFF6745 at 59.250 kb on - strand, within GFF6745 at 59.250 kb on - strand, within GFF6745
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 56,798 + GFF6742 0.70 +0.8 56,798 + GFF6742 0.70 -0.2 56,798 + GFF6742 0.70 -1.6 56,799 - GFF6742 0.71 -0.6 56,799 - GFF6742 0.71 +0.1 56,799 - GFF6742 0.71 +0.6 57,051 + +0.2 57,051 + +0.8 57,052 - -0.1 57,052 - -0.2 57,052 - -0.4 57,052 - -0.7 57,153 + GFF6743 0.18 +0.3 57,186 + GFF6743 0.23 -0.2 57,186 + GFF6743 0.23 +0.1 57,187 - GFF6743 0.23 -0.2 57,187 - GFF6743 0.23 +0.8 57,187 - GFF6743 0.23 -0.2 57,249 + GFF6743 0.33 -0.4 57,249 + GFF6743 0.33 -0.6 57,250 - GFF6743 0.33 +1.1 57,250 - GFF6743 0.33 +1.0 57,250 - GFF6743 0.33 +1.1 57,250 - GFF6743 0.33 -0.5 57,250 - GFF6743 0.33 +0.2 57,250 - GFF6743 0.33 +0.3 57,426 + GFF6743 0.61 -1.0 57,427 - GFF6743 0.61 -1.1 57,427 - GFF6743 0.61 -0.2 57,427 - GFF6743 0.61 -1.9 57,429 + GFF6743 0.61 -0.6 57,429 + GFF6743 0.61 +0.3 57,429 + GFF6743 0.61 +1.1 57,429 + GFF6743 0.61 +0.8 57,430 - GFF6743 0.62 -0.9 57,430 - GFF6743 0.62 -0.6 57,430 - GFF6743 0.62 +0.2 57,438 + GFF6743 0.63 +0.0 57,631 - -2.0 57,852 - GFF6744 0.20 -0.3 57,852 - GFF6744 0.20 +0.1 57,899 + GFF6744 0.25 -0.2 57,947 + GFF6744 0.31 +0.7 57,947 + GFF6744 0.31 +0.5 58,538 + +0.3 58,556 + -0.2 58,557 - -0.1 58,676 + +0.4 58,676 + -0.8 58,676 + +0.5 58,684 + -0.2 58,684 + -0.6 58,685 - +0.7 58,685 - -0.6 58,899 - GFF6745 0.26 -0.7 58,925 + GFF6745 0.29 -0.3 58,926 - GFF6745 0.29 +0.0 58,926 - GFF6745 0.29 +0.6 58,926 - GFF6745 0.29 -0.0 59,057 + GFF6745 0.44 +0.1 59,159 + GFF6745 0.56 -0.1 59,160 - GFF6745 0.56 -0.7 59,220 - GFF6745 0.63 +0.6 59,220 - GFF6745 0.63 -0.6 59,249 + GFF6745 0.66 +0.6 59,250 - GFF6745 0.67 +0.3 59,250 - GFF6745 0.67 -0.8
Or see this region's nucleotide sequence