Strain Fitness in Variovorax sp. SCN45 around GFF6537

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6535 and GFF6536 are separated by 13 nucleotidesGFF6536 and GFF6537 are separated by 234 nucleotidesGFF6537 and GFF6538 are separated by 100 nucleotides GFF6535 - Permease of the drug/metabolite transporter (DMT) superfamily, at 31,318 to 32,277 GFF6535 GFF6536 - protein of unknown function DUF1345, at 32,291 to 32,950 GFF6536 GFF6537 - hypothetical protein, at 33,185 to 34,024 GFF6537 GFF6538 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 34,125 to 35,753 GFF6538 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 32.442 kb on + strand, within GFF6536at 32.442 kb on + strand, within GFF6536at 32.442 kb on + strand, within GFF6536at 32.443 kb on - strand, within GFF6536at 32.443 kb on - strand, within GFF6536at 32.443 kb on - strand, within GFF6536at 32.443 kb on - strand, within GFF6536at 32.443 kb on - strand, within GFF6536at 32.443 kb on - strand, within GFF6536at 32.443 kb on - strand, within GFF6536at 32.448 kb on + strand, within GFF6536at 32.448 kb on + strand, within GFF6536at 32.448 kb on + strand, within GFF6536at 32.449 kb on - strand, within GFF6536at 32.449 kb on - strand, within GFF6536at 32.449 kb on - strand, within GFF6536at 32.449 kb on - strand, within GFF6536at 32.449 kb on - strand, within GFF6536at 32.449 kb on - strand, within GFF6536at 32.449 kb on - strand, within GFF6536at 32.451 kb on + strand, within GFF6536at 32.535 kb on + strand, within GFF6536at 32.535 kb on + strand, within GFF6536at 32.535 kb on + strand, within GFF6536at 32.535 kb on + strand, within GFF6536at 32.535 kb on + strand, within GFF6536at 32.535 kb on + strand, within GFF6536at 32.536 kb on - strand, within GFF6536at 32.536 kb on - strand, within GFF6536at 32.536 kb on - strand, within GFF6536at 32.536 kb on - strand, within GFF6536at 32.538 kb on + strand, within GFF6536at 32.539 kb on - strand, within GFF6536at 32.563 kb on - strand, within GFF6536at 32.729 kb on - strand, within GFF6536at 32.904 kb on + strandat 32.904 kb on + strandat 32.904 kb on + strandat 32.961 kb on + strandat 32.961 kb on + strandat 32.962 kb on - strandat 33.023 kb on + strandat 33.024 kb on - strandat 33.050 kb on + strandat 33.050 kb on + strandat 33.050 kb on + strandat 33.050 kb on + strandat 33.050 kb on + strandat 33.050 kb on + strandat 33.050 kb on + strandat 33.051 kb on - strandat 33.051 kb on - strandat 33.051 kb on - strandat 33.051 kb on - strandat 33.051 kb on - strandat 33.069 kb on - strandat 33.072 kb on - strandat 33.157 kb on + strandat 33.158 kb on - strandat 33.158 kb on - strandat 33.335 kb on + strand, within GFF6537at 33.335 kb on + strand, within GFF6537at 33.335 kb on + strand, within GFF6537at 33.335 kb on + strand, within GFF6537at 33.377 kb on + strand, within GFF6537at 33.479 kb on + strand, within GFF6537at 33.479 kb on + strand, within GFF6537at 33.480 kb on - strand, within GFF6537at 33.480 kb on - strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.483 kb on - strand, within GFF6537at 33.483 kb on - strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.489 kb on - strand, within GFF6537at 33.489 kb on - strand, within GFF6537at 33.501 kb on - strand, within GFF6537at 33.605 kb on + strand, within GFF6537at 33.605 kb on + strand, within GFF6537at 33.605 kb on + strand, within GFF6537at 33.606 kb on - strand, within GFF6537at 33.662 kb on + strand, within GFF6537at 33.663 kb on - strand, within GFF6537at 33.665 kb on + strand, within GFF6537at 33.665 kb on + strand, within GFF6537at 33.722 kb on + strand, within GFF6537at 33.722 kb on + strand, within GFF6537at 33.722 kb on + strand, within GFF6537at 33.723 kb on - strand, within GFF6537at 33.723 kb on - strand, within GFF6537at 33.723 kb on - strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.861 kb on - strand, within GFF6537at 33.861 kb on - strand, within GFF6537at 33.861 kb on - strand, within GFF6537at 33.920 kb on + strand, within GFF6537at 33.921 kb on - strand, within GFF6537at 33.921 kb on - strand, within GFF6537at 34.023 kb on - strandat 34.084 kb on + strandat 34.474 kb on - strand, within GFF6538at 34.474 kb on - strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.702 kb on - strand, within GFF6538at 34.702 kb on - strand, within GFF6538at 34.702 kb on - strand, within GFF6538at 34.983 kb on + strand, within GFF6538at 34.984 kb on - strand, within GFF6538at 34.984 kb on - strand, within GFF6538

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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32,442 + GFF6536 0.23 +0.1
32,442 + GFF6536 0.23 -0.4
32,442 + GFF6536 0.23 -1.4
32,443 - GFF6536 0.23 +0.8
32,443 - GFF6536 0.23 +1.4
32,443 - GFF6536 0.23 +0.4
32,443 - GFF6536 0.23 -0.4
32,443 - GFF6536 0.23 -0.4
32,443 - GFF6536 0.23 +0.9
32,443 - GFF6536 0.23 -0.5
32,448 + GFF6536 0.24 -0.7
32,448 + GFF6536 0.24 -0.3
32,448 + GFF6536 0.24 +0.3
32,449 - GFF6536 0.24 -0.4
32,449 - GFF6536 0.24 -0.4
32,449 - GFF6536 0.24 +0.3
32,449 - GFF6536 0.24 +0.6
32,449 - GFF6536 0.24 -0.5
32,449 - GFF6536 0.24 -0.7
32,449 - GFF6536 0.24 -0.8
32,451 + GFF6536 0.24 +0.4
32,535 + GFF6536 0.37 -0.8
32,535 + GFF6536 0.37 -1.1
32,535 + GFF6536 0.37 +0.4
32,535 + GFF6536 0.37 -0.5
32,535 + GFF6536 0.37 -0.2
32,535 + GFF6536 0.37 -0.9
32,536 - GFF6536 0.37 -0.7
32,536 - GFF6536 0.37 -0.5
32,536 - GFF6536 0.37 +0.4
32,536 - GFF6536 0.37 +0.6
32,538 + GFF6536 0.37 -0.5
32,539 - GFF6536 0.38 -0.1
32,563 - GFF6536 0.41 -0.5
32,729 - GFF6536 0.66 +0.3
32,904 + +0.3
32,904 + +0.7
32,904 + -0.4
32,961 + -1.3
32,961 + -0.3
32,962 - +0.2
33,023 + -0.6
33,024 - +0.0
33,050 + -1.4
33,050 + -0.3
33,050 + +0.7
33,050 + -1.3
33,050 + -1.5
33,050 + -1.6
33,050 + -0.4
33,051 - -1.2
33,051 - -0.4
33,051 - +0.6
33,051 - -0.1
33,051 - -0.4
33,069 - +1.1
33,072 - +0.1
33,157 + +0.4
33,158 - +0.6
33,158 - -0.5
33,335 + GFF6537 0.18 -0.6
33,335 + GFF6537 0.18 -0.5
33,335 + GFF6537 0.18 -0.6
33,335 + GFF6537 0.18 -2.4
33,377 + GFF6537 0.23 -0.0
33,479 + GFF6537 0.35 -0.6
33,479 + GFF6537 0.35 -0.1
33,480 - GFF6537 0.35 +0.2
33,480 - GFF6537 0.35 -0.6
33,482 + GFF6537 0.35 -0.6
33,482 + GFF6537 0.35 -1.1
33,482 + GFF6537 0.35 -0.6
33,482 + GFF6537 0.35 -0.0
33,482 + GFF6537 0.35 +0.6
33,482 + GFF6537 0.35 +0.3
33,482 + GFF6537 0.35 -1.3
33,482 + GFF6537 0.35 -1.3
33,483 - GFF6537 0.35 -0.6
33,483 - GFF6537 0.35 -0.4
33,488 + GFF6537 0.36 -0.4
33,488 + GFF6537 0.36 -2.6
33,488 + GFF6537 0.36 +0.4
33,488 + GFF6537 0.36 -2.6
33,488 + GFF6537 0.36 -1.2
33,489 - GFF6537 0.36 -0.1
33,489 - GFF6537 0.36 -0.1
33,501 - GFF6537 0.38 +0.4
33,605 + GFF6537 0.50 +0.7
33,605 + GFF6537 0.50 -0.9
33,605 + GFF6537 0.50 -0.4
33,606 - GFF6537 0.50 -1.2
33,662 + GFF6537 0.57 -0.5
33,663 - GFF6537 0.57 +0.7
33,665 + GFF6537 0.57 -0.7
33,665 + GFF6537 0.57 +0.0
33,722 + GFF6537 0.64 +0.4
33,722 + GFF6537 0.64 +0.1
33,722 + GFF6537 0.64 -1.3
33,723 - GFF6537 0.64 +0.6
33,723 - GFF6537 0.64 -0.4
33,723 - GFF6537 0.64 -0.4
33,860 + GFF6537 0.80 -0.1
33,860 + GFF6537 0.80 -0.1
33,860 + GFF6537 0.80 -0.9
33,860 + GFF6537 0.80 -0.9
33,860 + GFF6537 0.80 +0.9
33,860 + GFF6537 0.80 -0.5
33,861 - GFF6537 0.80 -0.4
33,861 - GFF6537 0.80 -0.6
33,861 - GFF6537 0.80 -0.2
33,920 + GFF6537 0.88 -0.7
33,921 - GFF6537 0.88 -0.1
33,921 - GFF6537 0.88 +0.4
34,023 - +1.0
34,084 + +0.1
34,474 - GFF6538 0.21 +0.1
34,474 - GFF6538 0.21 +0.1
34,619 + GFF6538 0.30 -1.0
34,619 + GFF6538 0.30 -0.7
34,619 + GFF6538 0.30 -0.1
34,619 + GFF6538 0.30 -0.5
34,619 + GFF6538 0.30 -0.3
34,620 - GFF6538 0.30 +0.8
34,620 - GFF6538 0.30 +0.1
34,620 - GFF6538 0.30 -0.6
34,620 - GFF6538 0.30 -0.8
34,620 - GFF6538 0.30 -0.1
34,701 + GFF6538 0.35 +0.9
34,701 + GFF6538 0.35 -0.6
34,701 + GFF6538 0.35 +2.4
34,701 + GFF6538 0.35 -0.1
34,701 + GFF6538 0.35 -0.4
34,702 - GFF6538 0.35 +0.3
34,702 - GFF6538 0.35 +1.8
34,702 - GFF6538 0.35 -0.4
34,983 + GFF6538 0.53 -0.5
34,984 - GFF6538 0.53 -0.6
34,984 - GFF6538 0.53 -0.8

Or see this region's nucleotide sequence