Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6151 and GFF6152 are separated by 92 nucleotides GFF6152 and GFF6153 are separated by 9 nucleotides GFF6153 and GFF6154 are separated by 183 nucleotides GFF6154 and GFF6155 are separated by 10 nucleotides
GFF6151 - Transcriptional regulator, LysR family, at 56,442 to 57,404
GFF6151
GFF6152 - hypothetical protein, at 57,497 to 57,874
GFF6152
GFF6153 - Transcriptional activator of acetoin/glycerol metabolism, at 57,884 to 59,026
GFF6153
GFF6154 - Aerobic carbon monoxide dehydrogenase (quinone), small chain (EC 1.2.5.3), at 59,210 to 59,707
GFF6154
GFF6155 - Aerobic carbon monoxide dehydrogenase (quinone), large chain (EC 1.2.5.3), at 59,718 to 62,108
GFF6155
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 57.031 kb on - strand, within GFF6151 at 57.121 kb on - strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.540 kb on - strand, within GFF6152 at 57.540 kb on - strand, within GFF6152 at 57.617 kb on + strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.878 kb on + strand at 57.878 kb on + strand at 57.879 kb on - strand at 57.879 kb on - strand at 57.879 kb on - strand at 57.928 kb on - strand at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.270 kb on - strand, within GFF6153 at 58.270 kb on - strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.648 kb on - strand, within GFF6153 at 58.648 kb on - strand, within GFF6153 at 59.134 kb on + strand at 59.135 kb on - strand at 59.139 kb on + strand at 59.140 kb on - strand at 59.140 kb on - strand at 59.781 kb on + strand at 59.781 kb on + strand at 59.808 kb on + strand at 59.808 kb on + strand at 59.808 kb on + strand at 59.809 kb on - strand at 59.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 56,997 + GFF6151 0.58 -0.1 56,997 + GFF6151 0.58 +0.1 56,997 + GFF6151 0.58 -1.0 56,997 + GFF6151 0.58 -0.1 56,997 + GFF6151 0.58 -1.5 56,997 + GFF6151 0.58 -0.1 56,998 - GFF6151 0.58 +1.8 56,998 - GFF6151 0.58 -0.2 56,998 - GFF6151 0.58 -0.4 57,031 - GFF6151 0.61 -0.3 57,121 - GFF6151 0.71 -1.0 57,306 + GFF6151 0.90 -0.3 57,306 + GFF6151 0.90 -0.8 57,306 + GFF6151 0.90 -2.0 57,306 + GFF6151 0.90 -0.7 57,306 + GFF6151 0.90 +1.5 57,307 - GFF6151 0.90 +0.5 57,307 - GFF6151 0.90 -0.6 57,307 - GFF6151 0.90 -0.5 57,307 - GFF6151 0.90 +0.5 57,307 - GFF6151 0.90 -0.3 57,539 + GFF6152 0.11 +2.8 57,539 + GFF6152 0.11 -0.1 57,539 + GFF6152 0.11 -0.3 57,539 + GFF6152 0.11 -0.5 57,539 + GFF6152 0.11 +0.3 57,539 + GFF6152 0.11 -2.6 57,539 + GFF6152 0.11 -0.2 57,539 + GFF6152 0.11 -0.1 57,540 - GFF6152 0.11 -0.1 57,540 - GFF6152 0.11 -0.8 57,617 + GFF6152 0.32 +0.0 57,618 - GFF6152 0.32 -0.1 57,618 - GFF6152 0.32 -1.5 57,618 - GFF6152 0.32 -1.3 57,618 - GFF6152 0.32 +3.1 57,878 + +0.7 57,878 + -0.8 57,879 - +0.5 57,879 - +0.2 57,879 - -0.6 57,928 - +0.2 58,269 + GFF6153 0.34 +1.7 58,269 + GFF6153 0.34 -0.3 58,269 + GFF6153 0.34 +0.0 58,269 + GFF6153 0.34 -0.5 58,269 + GFF6153 0.34 +0.7 58,270 - GFF6153 0.34 -1.0 58,270 - GFF6153 0.34 -0.2 58,509 + GFF6153 0.55 +0.1 58,509 + GFF6153 0.55 -0.1 58,509 + GFF6153 0.55 -0.1 58,510 - GFF6153 0.55 +0.7 58,510 - GFF6153 0.55 +0.1 58,510 - GFF6153 0.55 +0.8 58,510 - GFF6153 0.55 -0.3 58,648 - GFF6153 0.67 +3.1 58,648 - GFF6153 0.67 -0.2 59,134 + -0.1 59,135 - -1.4 59,139 + +1.5 59,140 - -0.7 59,140 - -0.8 59,781 + +0.3 59,781 + +0.0 59,808 + -0.7 59,808 + +0.3 59,808 + -0.1 59,809 - +0.0 59,809 - -0.5
Or see this region's nucleotide sequence