Strain Fitness in Variovorax sp. SCN45 around GFF6065

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6063 and GFF6064 are separated by 70 nucleotidesGFF6064 and GFF6065 overlap by 47 nucleotidesGFF6065 and GFF6066 are separated by 121 nucleotides GFF6063 - Sodium/bile acid symporter family, at 125,217 to 126,221 GFF6063 GFF6064 - Transcriptional regulator YfeR, LysR family, at 126,292 to 127,221 GFF6064 GFF6065 - Two-component transcriptional response regulator receiver domain, at 127,175 to 127,600 GFF6065 GFF6066 - Quinone oxidoreductase (EC 1.6.5.5), at 127,722 to 128,708 GFF6066 Position (kb) 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.297 kb on + strandat 127.338 kb on + strand, within GFF6065at 127.338 kb on + strand, within GFF6065at 127.338 kb on + strand, within GFF6065at 127.338 kb on + strand, within GFF6065at 127.339 kb on - strand, within GFF6065at 127.339 kb on - strand, within GFF6065at 127.581 kb on + strandat 127.581 kb on + strandat 127.581 kb on + strandat 127.581 kb on + strandat 127.581 kb on + strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.633 kb on + strandat 127.633 kb on + strandat 127.634 kb on - strandat 127.634 kb on - strandat 127.634 kb on - strandat 127.681 kb on + strandat 127.801 kb on + strandat 127.802 kb on - strandat 127.802 kb on - strandat 127.802 kb on - strandat 127.802 kb on - strandat 127.921 kb on + strand, within GFF6066at 127.921 kb on + strand, within GFF6066at 127.921 kb on + strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.060 kb on - strand, within GFF6066at 128.060 kb on - strand, within GFF6066at 128.125 kb on + strand, within GFF6066at 128.125 kb on + strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.425 kb on + strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.569 kb on + strand, within GFF6066at 128.570 kb on - strand, within GFF6066at 128.570 kb on - strand, within GFF6066at 128.570 kb on - strand, within GFF6066

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
126,297 + -0.0
127,338 + GFF6065 0.38 +2.2
127,338 + GFF6065 0.38 +0.4
127,338 + GFF6065 0.38 +0.8
127,338 + GFF6065 0.38 -0.0
127,339 - GFF6065 0.38 -0.3
127,339 - GFF6065 0.38 -0.0
127,581 + +0.2
127,581 + -0.1
127,581 + +0.3
127,581 + -0.6
127,581 + +0.1
127,582 - -0.3
127,582 - -0.8
127,582 - -0.7
127,582 - +0.8
127,582 - -0.0
127,582 - -0.6
127,633 + +1.2
127,633 + -0.1
127,634 - +0.1
127,634 - +0.8
127,634 - -3.3
127,681 + +0.4
127,801 + -0.1
127,802 - -0.0
127,802 - -1.6
127,802 - +0.1
127,802 - -0.4
127,921 + GFF6066 0.20 +0.6
127,921 + GFF6066 0.20 +0.3
127,921 + GFF6066 0.20 -0.8
127,922 - GFF6066 0.20 -0.8
127,922 - GFF6066 0.20 -1.6
127,922 - GFF6066 0.20 +0.1
127,922 - GFF6066 0.20 +0.2
128,059 + GFF6066 0.34 -0.6
128,059 + GFF6066 0.34 -0.1
128,059 + GFF6066 0.34 -0.5
128,059 + GFF6066 0.34 +0.1
128,059 + GFF6066 0.34 -0.3
128,060 - GFF6066 0.34 -0.7
128,060 - GFF6066 0.34 +0.5
128,125 + GFF6066 0.41 +0.1
128,125 + GFF6066 0.41 +0.2
128,126 - GFF6066 0.41 -0.0
128,126 - GFF6066 0.41 -0.9
128,126 - GFF6066 0.41 -0.5
128,126 - GFF6066 0.41 -0.7
128,126 - GFF6066 0.41 -0.8
128,320 + GFF6066 0.61 -0.9
128,320 + GFF6066 0.61 -0.6
128,320 + GFF6066 0.61 -0.6
128,321 - GFF6066 0.61 -0.4
128,321 - GFF6066 0.61 -0.3
128,321 - GFF6066 0.61 -0.4
128,321 - GFF6066 0.61 -1.6
128,425 + GFF6066 0.71 +0.7
128,552 - GFF6066 0.84 +0.4
128,552 - GFF6066 0.84 +0.1
128,552 - GFF6066 0.84 -0.2
128,552 - GFF6066 0.84 -0.4
128,569 + GFF6066 0.86 -0.3
128,570 - GFF6066 0.86 -0.6
128,570 - GFF6066 0.86 -1.0
128,570 - GFF6066 0.86 -0.8

Or see this region's nucleotide sequence