Strain Fitness in Variovorax sp. SCN45 around GFF603

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF602 and GFF603 are separated by 77 nucleotidesGFF603 and GFF604 overlap by 17 nucleotides GFF602 - Transcriptional regulator, LysR family => TcuR, at 646,984 to 647,910 GFF602 GFF603 - Tricarballylate dehydrogenase, TcuA, at 647,988 to 649,415 GFF603 GFF604 - Tricarballylate utilization protein, TcuB, at 649,399 to 650,619 GFF604 Position (kb) 647 648 649 650Strain fitness (log2 ratio) -2 -1 0 1 2at 647.005 kb on + strandat 647.005 kb on + strandat 647.006 kb on - strandat 647.006 kb on - strandat 647.154 kb on + strand, within GFF602at 647.336 kb on + strand, within GFF602at 647.336 kb on + strand, within GFF602at 647.336 kb on + strand, within GFF602at 647.336 kb on + strand, within GFF602at 647.956 kb on + strandat 647.956 kb on + strandat 647.957 kb on - strandat 647.992 kb on + strandat 647.992 kb on + strandat 647.993 kb on - strandat 647.993 kb on - strandat 647.993 kb on - strandat 647.993 kb on - strandat 647.993 kb on - strandat 647.993 kb on - strandat 647.993 kb on - strandat 647.993 kb on - strandat 647.998 kb on + strandat 647.998 kb on + strandat 647.998 kb on + strandat 647.998 kb on + strandat 647.998 kb on + strandat 647.999 kb on - strandat 647.999 kb on - strandat 647.999 kb on - strandat 647.999 kb on - strandat 647.999 kb on - strandat 647.999 kb on - strandat 648.174 kb on + strand, within GFF603at 648.174 kb on + strand, within GFF603at 648.189 kb on + strand, within GFF603at 648.189 kb on + strand, within GFF603at 648.190 kb on - strand, within GFF603at 648.190 kb on - strand, within GFF603at 648.190 kb on - strand, within GFF603at 648.387 kb on + strand, within GFF603at 648.387 kb on + strand, within GFF603at 648.387 kb on + strand, within GFF603at 648.387 kb on + strand, within GFF603at 648.388 kb on - strand, within GFF603at 648.388 kb on - strand, within GFF603at 648.388 kb on - strand, within GFF603at 648.390 kb on + strand, within GFF603at 648.416 kb on - strand, within GFF603at 648.426 kb on + strand, within GFF603at 648.439 kb on + strand, within GFF603at 648.736 kb on - strand, within GFF603at 648.736 kb on - strand, within GFF603at 648.810 kb on + strand, within GFF603at 648.811 kb on - strand, within GFF603at 648.843 kb on + strand, within GFF603at 648.843 kb on + strand, within GFF603at 648.844 kb on - strand, within GFF603at 648.844 kb on - strand, within GFF603at 649.026 kb on + strand, within GFF603at 649.026 kb on + strand, within GFF603at 649.179 kb on + strand, within GFF603at 649.179 kb on + strand, within GFF603at 649.180 kb on - strand, within GFF603at 649.180 kb on - strand, within GFF603at 649.180 kb on - strand, within GFF603at 649.180 kb on - strand, within GFF603at 649.180 kb on - strand, within GFF603at 649.180 kb on - strand, within GFF603at 649.290 kb on + strandat 649.290 kb on + strandat 649.290 kb on + strandat 649.291 kb on - strandat 649.549 kb on + strand, within GFF604at 649.621 kb on + strand, within GFF604at 649.621 kb on + strand, within GFF604at 649.621 kb on + strand, within GFF604at 649.622 kb on - strand, within GFF604at 649.622 kb on - strand, within GFF604at 649.672 kb on + strand, within GFF604at 649.673 kb on - strand, within GFF604at 649.738 kb on + strand, within GFF604at 649.739 kb on - strand, within GFF604at 649.739 kb on - strand, within GFF604at 649.739 kb on - strand, within GFF604at 649.739 kb on - strand, within GFF604at 649.739 kb on - strand, within GFF604at 649.747 kb on + strand, within GFF604at 649.747 kb on + strand, within GFF604at 649.748 kb on - strand, within GFF604at 649.895 kb on - strand, within GFF604at 649.895 kb on - strand, within GFF604at 650.089 kb on + strand, within GFF604at 650.089 kb on + strand, within GFF604at 650.089 kb on + strand, within GFF604at 650.089 kb on + strand, within GFF604at 650.090 kb on - strand, within GFF604at 650.090 kb on - strand, within GFF604at 650.177 kb on - strand, within GFF604at 650.177 kb on - strand, within GFF604at 650.177 kb on - strand, within GFF604at 650.221 kb on + strand, within GFF604at 650.221 kb on + strand, within GFF604at 650.222 kb on - strand, within GFF604at 650.222 kb on - strand, within GFF604at 650.222 kb on - strand, within GFF604at 650.222 kb on - strand, within GFF604at 650.222 kb on - strand, within GFF604at 650.228 kb on - strand, within GFF604at 650.228 kb on - strand, within GFF604at 650.252 kb on - strand, within GFF604

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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647,005 + -2.4
647,005 + -0.9
647,006 - -0.5
647,006 - +0.9
647,154 + GFF602 0.18 +0.1
647,336 + GFF602 0.38 +1.1
647,336 + GFF602 0.38 -0.5
647,336 + GFF602 0.38 +0.5
647,336 + GFF602 0.38 +0.3
647,956 + +0.3
647,956 + -1.2
647,957 - -0.2
647,992 + +0.1
647,992 + -0.2
647,993 - -0.5
647,993 - -0.5
647,993 - +0.5
647,993 - -0.9
647,993 - -0.4
647,993 - +0.3
647,993 - -0.9
647,993 - -0.6
647,998 + -0.1
647,998 + -0.5
647,998 + +1.3
647,998 + -0.1
647,998 + +0.4
647,999 - +0.5
647,999 - +0.5
647,999 - +0.4
647,999 - -0.7
647,999 - -1.0
647,999 - -1.9
648,174 + GFF603 0.13 +0.1
648,174 + GFF603 0.13 -1.1
648,189 + GFF603 0.14 -0.4
648,189 + GFF603 0.14 +0.9
648,190 - GFF603 0.14 -0.3
648,190 - GFF603 0.14 -0.0
648,190 - GFF603 0.14 -2.0
648,387 + GFF603 0.28 -0.2
648,387 + GFF603 0.28 -1.0
648,387 + GFF603 0.28 +0.0
648,387 + GFF603 0.28 -0.7
648,388 - GFF603 0.28 +0.3
648,388 - GFF603 0.28 -1.0
648,388 - GFF603 0.28 +0.9
648,390 + GFF603 0.28 -1.0
648,416 - GFF603 0.30 +0.5
648,426 + GFF603 0.31 -0.6
648,439 + GFF603 0.32 -0.2
648,736 - GFF603 0.52 -0.5
648,736 - GFF603 0.52 -0.0
648,810 + GFF603 0.58 -2.3
648,811 - GFF603 0.58 -0.6
648,843 + GFF603 0.60 -0.8
648,843 + GFF603 0.60 -1.1
648,844 - GFF603 0.60 -0.7
648,844 - GFF603 0.60 -0.3
649,026 + GFF603 0.73 +0.8
649,026 + GFF603 0.73 +0.6
649,179 + GFF603 0.83 -0.7
649,179 + GFF603 0.83 -0.2
649,180 - GFF603 0.83 -0.7
649,180 - GFF603 0.83 -0.8
649,180 - GFF603 0.83 -0.5
649,180 - GFF603 0.83 -0.6
649,180 - GFF603 0.83 -2.3
649,180 - GFF603 0.83 -0.2
649,290 + -0.0
649,290 + -1.2
649,290 + -1.1
649,291 - +1.3
649,549 + GFF604 0.12 -0.5
649,621 + GFF604 0.18 -0.6
649,621 + GFF604 0.18 +1.3
649,621 + GFF604 0.18 -0.8
649,622 - GFF604 0.18 -0.2
649,622 - GFF604 0.18 +0.0
649,672 + GFF604 0.22 -1.4
649,673 - GFF604 0.22 -0.5
649,738 + GFF604 0.28 -0.8
649,739 - GFF604 0.28 +0.0
649,739 - GFF604 0.28 +0.2
649,739 - GFF604 0.28 -0.4
649,739 - GFF604 0.28 -0.2
649,739 - GFF604 0.28 -0.1
649,747 + GFF604 0.29 +0.2
649,747 + GFF604 0.29 -0.8
649,748 - GFF604 0.29 -0.6
649,895 - GFF604 0.41 -0.8
649,895 - GFF604 0.41 +0.6
650,089 + GFF604 0.57 +1.3
650,089 + GFF604 0.57 -0.2
650,089 + GFF604 0.57 +0.3
650,089 + GFF604 0.57 +0.3
650,090 - GFF604 0.57 +0.5
650,090 - GFF604 0.57 -1.5
650,177 - GFF604 0.64 -0.0
650,177 - GFF604 0.64 -0.5
650,177 - GFF604 0.64 -0.7
650,221 + GFF604 0.67 -0.4
650,221 + GFF604 0.67 -1.1
650,222 - GFF604 0.67 -1.4
650,222 - GFF604 0.67 +0.9
650,222 - GFF604 0.67 +0.0
650,222 - GFF604 0.67 -0.4
650,222 - GFF604 0.67 +2.3
650,228 - GFF604 0.68 -0.4
650,228 - GFF604 0.68 +0.0
650,252 - GFF604 0.70 -0.7

Or see this region's nucleotide sequence