Strain Fitness in Variovorax sp. SCN45 around GFF601

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF598 and GFF599 are separated by 46 nucleotidesGFF599 and GFF600 are separated by 60 nucleotidesGFF600 and GFF601 are separated by 22 nucleotidesGFF601 and GFF602 are separated by 108 nucleotides GFF598 - no description, at 644,831 to 645,157 GFF598 GFF599 - no description, at 645,204 to 645,434 GFF599 GFF600 - Metal-dependent phosphohydrolase, HD subdomain, at 645,495 to 646,085 GFF600 GFF601 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 646,108 to 646,875 GFF601 GFF602 - Transcriptional regulator, LysR family => TcuR, at 646,984 to 647,910 GFF602 Position (kb) 646 647Strain fitness (log2 ratio) -2 -1 0 1 2at 645.186 kb on + strandat 645.186 kb on + strandat 645.186 kb on + strandat 645.187 kb on - strandat 645.406 kb on - strand, within GFF599at 645.458 kb on + strandat 645.458 kb on + strandat 645.458 kb on + strandat 645.458 kb on + strandat 645.458 kb on + strandat 645.458 kb on + strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.633 kb on + strand, within GFF600at 645.634 kb on - strand, within GFF600at 645.634 kb on - strand, within GFF600at 645.634 kb on - strand, within GFF600at 645.657 kb on + strand, within GFF600at 645.658 kb on - strand, within GFF600at 645.658 kb on - strand, within GFF600at 645.658 kb on - strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.715 kb on - strand, within GFF600at 645.715 kb on - strand, within GFF600at 645.715 kb on - strand, within GFF600at 645.715 kb on - strand, within GFF600at 645.715 kb on - strand, within GFF600at 645.715 kb on - strand, within GFF600at 645.715 kb on - strand, within GFF600at 645.858 kb on + strand, within GFF600at 645.858 kb on + strand, within GFF600at 645.858 kb on + strand, within GFF600at 645.858 kb on + strand, within GFF600at 645.859 kb on - strand, within GFF600at 645.859 kb on - strand, within GFF600at 645.859 kb on - strand, within GFF600at 645.922 kb on - strand, within GFF600at 645.951 kb on + strand, within GFF600at 646.050 kb on + strandat 646.050 kb on + strandat 646.050 kb on + strandat 646.050 kb on + strandat 646.050 kb on + strandat 646.050 kb on + strandat 646.050 kb on + strandat 646.050 kb on + strandat 646.051 kb on - strandat 646.051 kb on - strandat 646.051 kb on - strandat 646.051 kb on - strandat 646.207 kb on + strand, within GFF601at 646.207 kb on + strand, within GFF601at 646.207 kb on + strand, within GFF601at 646.208 kb on - strand, within GFF601at 646.208 kb on - strand, within GFF601at 646.537 kb on + strand, within GFF601at 646.537 kb on + strand, within GFF601at 646.547 kb on - strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.681 kb on + strand, within GFF601at 646.682 kb on - strand, within GFF601at 646.682 kb on - strand, within GFF601at 646.682 kb on - strand, within GFF601at 646.682 kb on - strand, within GFF601at 646.682 kb on - strand, within GFF601at 646.682 kb on - strand, within GFF601at 646.682 kb on - strand, within GFF601at 646.682 kb on - strand, within GFF601at 646.864 kb on + strandat 646.864 kb on + strandat 646.864 kb on + strandat 646.864 kb on + strandat 646.864 kb on + strandat 646.864 kb on + strandat 646.865 kb on - strandat 646.865 kb on - strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.873 kb on + strandat 646.874 kb on - strandat 646.874 kb on - strandat 646.874 kb on - strandat 647.005 kb on + strandat 647.005 kb on + strandat 647.006 kb on - strandat 647.006 kb on - strandat 647.154 kb on + strand, within GFF602at 647.336 kb on + strand, within GFF602at 647.336 kb on + strand, within GFF602at 647.336 kb on + strand, within GFF602at 647.336 kb on + strand, within GFF602

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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645,186 + -0.6
645,186 + -0.6
645,186 + -0.3
645,187 - +2.3
645,406 - GFF599 0.87 -0.2
645,458 + -0.7
645,458 + -0.1
645,458 + +0.3
645,458 + -0.4
645,458 + -1.3
645,458 + -1.4
645,459 - -0.6
645,459 - +1.3
645,459 - -0.2
645,459 - -0.7
645,459 - -0.0
645,459 - +0.4
645,459 - -0.3
645,459 - -1.3
645,459 - -0.6
645,459 - -0.9
645,459 - -0.2
645,459 - +0.2
645,633 + GFF600 0.23 -0.9
645,634 - GFF600 0.24 -0.7
645,634 - GFF600 0.24 +0.4
645,634 - GFF600 0.24 +1.3
645,657 + GFF600 0.27 -0.1
645,658 - GFF600 0.28 +0.5
645,658 - GFF600 0.28 -0.7
645,658 - GFF600 0.28 +0.0
645,714 + GFF600 0.37 +0.4
645,714 + GFF600 0.37 +0.3
645,714 + GFF600 0.37 -0.1
645,714 + GFF600 0.37 +0.5
645,714 + GFF600 0.37 +2.6
645,714 + GFF600 0.37 +0.3
645,714 + GFF600 0.37 +1.3
645,714 + GFF600 0.37 +0.3
645,714 + GFF600 0.37 -0.1
645,714 + GFF600 0.37 -0.7
645,714 + GFF600 0.37 -0.7
645,715 - GFF600 0.37 -1.0
645,715 - GFF600 0.37 -0.1
645,715 - GFF600 0.37 -1.2
645,715 - GFF600 0.37 -1.7
645,715 - GFF600 0.37 -0.5
645,715 - GFF600 0.37 +0.5
645,715 - GFF600 0.37 -0.3
645,858 + GFF600 0.61 -0.7
645,858 + GFF600 0.61 +0.5
645,858 + GFF600 0.61 +0.3
645,858 + GFF600 0.61 -0.7
645,859 - GFF600 0.62 -0.4
645,859 - GFF600 0.62 -2.6
645,859 - GFF600 0.62 +1.5
645,922 - GFF600 0.72 +0.0
645,951 + GFF600 0.77 -0.7
646,050 + -0.6
646,050 + -0.3
646,050 + -0.1
646,050 + -0.2
646,050 + -0.2
646,050 + -1.1
646,050 + -0.7
646,050 + +0.2
646,051 - -0.5
646,051 - -0.7
646,051 - -0.7
646,051 - +1.0
646,207 + GFF601 0.13 +0.4
646,207 + GFF601 0.13 +0.8
646,207 + GFF601 0.13 +0.5
646,208 - GFF601 0.13 -0.2
646,208 - GFF601 0.13 +1.3
646,537 + GFF601 0.56 +0.4
646,537 + GFF601 0.56 -0.0
646,547 - GFF601 0.57 +0.7
646,681 + GFF601 0.75 -0.6
646,681 + GFF601 0.75 +0.4
646,681 + GFF601 0.75 +0.1
646,681 + GFF601 0.75 -0.2
646,681 + GFF601 0.75 -0.1
646,681 + GFF601 0.75 +0.5
646,681 + GFF601 0.75 -0.1
646,681 + GFF601 0.75 +0.3
646,681 + GFF601 0.75 -0.4
646,681 + GFF601 0.75 +0.4
646,681 + GFF601 0.75 +0.1
646,681 + GFF601 0.75 -0.3
646,682 - GFF601 0.75 -1.5
646,682 - GFF601 0.75 -1.4
646,682 - GFF601 0.75 -0.7
646,682 - GFF601 0.75 -2.4
646,682 - GFF601 0.75 -1.7
646,682 - GFF601 0.75 -0.5
646,682 - GFF601 0.75 +0.1
646,682 - GFF601 0.75 +1.1
646,864 + -0.6
646,864 + +0.1
646,864 + +0.1
646,864 + +0.7
646,864 + +0.5
646,864 + +0.3
646,865 - +0.0
646,865 - -0.8
646,873 + -2.3
646,873 + -0.6
646,873 + -0.3
646,873 + -0.6
646,873 + -0.5
646,873 + +0.3
646,873 + +1.1
646,873 + -1.6
646,873 + -0.2
646,873 + -0.5
646,873 + +0.9
646,874 - +0.3
646,874 - +0.1
646,874 - +0.3
647,005 + -2.4
647,005 + -0.9
647,006 - -0.5
647,006 - +0.9
647,154 + GFF602 0.18 +0.1
647,336 + GFF602 0.38 +1.1
647,336 + GFF602 0.38 -0.5
647,336 + GFF602 0.38 +0.5
647,336 + GFF602 0.38 +0.3

Or see this region's nucleotide sequence