Strain Fitness in Variovorax sp. SCN45 around GFF5874

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
86,943	+		GFF5872	0.44	-0.5
86,943	+		GFF5872	0.44	-0.9
86,943	+		GFF5872	0.44	-0.7
86,943	+		GFF5872	0.44	-0.1
86,943	+		GFF5872	0.44	-0.2
86,944	-		GFF5872	0.44	+0.7
86,944	-		GFF5872	0.44	-0.5
86,944	-		GFF5872	0.44	+0.3
86,944	-		GFF5872	0.44	-0.9
86,944	-		GFF5872	0.44	-0.4
86,944	-		GFF5872	0.44	-1.1
87,064	-		GFF5872	0.56	-0.8
87,138	+		GFF5872	0.63	+0.1
87,138	+		GFF5872	0.63	+0.2
87,139	-		GFF5872	0.63	+0.5
87,198	+		GFF5872	0.69	-0.8
87,198	+		GFF5872	0.69	-0.1
87,198	+		GFF5872	0.69	+0.1
87,198	+		GFF5872	0.69	+0.2
87,198	+		GFF5872	0.69	-0.3
87,198	+		GFF5872	0.69	-0.4
87,198	+		GFF5872	0.69	-0.1
87,198	+		GFF5872	0.69	+0.0
87,198	+		GFF5872	0.69	-0.8
87,198	+		GFF5872	0.69	-0.4
87,199	-		GFF5872	0.69	-0.3
87,199	-		GFF5872	0.69	+0.4
87,199	-		GFF5872	0.69	-0.1
87,199	-		GFF5872	0.69	+0.2
87,199	-		GFF5872	0.69	+1.1
87,199	-		GFF5872	0.69	+2.7
87,199	-		GFF5872	0.69	+0.1
87,199	-		GFF5872	0.69	-0.5
87,199	-		GFF5872	0.69	-0.5
87,199	-		GFF5872	0.69	-0.4
87,282	+		GFF5872	0.77	+0.2
87,339	+		GFF5872	0.82	-0.9
87,340	-		GFF5872	0.83	+1.7
87,719	+				-0.0
87,719	+				+0.1
87,719	+				+1.2
87,719	+				-1.2
87,720	-				-0.0
87,720	-				-0.1
87,720	-				+0.1
87,720	-				+1.3
87,720	-				-0.3
87,720	-				-0.1
87,745	+				-0.5
87,745	+				-0.2
87,988	+		GFF5874	0.15	-0.8
87,988	+		GFF5874	0.15	-0.7
87,988	+		GFF5874	0.15	+0.9
87,988	+		GFF5874	0.15	+0.1
87,988	+		GFF5874	0.15	-0.4
87,988	+		GFF5874	0.15	+0.9
87,988	+		GFF5874	0.15	-0.6
87,989	-		GFF5874	0.15	-0.6
87,989	-		GFF5874	0.15	+1.2
87,989	-		GFF5874	0.15	-0.3
87,989	-		GFF5874	0.15	+0.1
87,989	-		GFF5874	0.15	+0.1
87,989	-		GFF5874	0.15	+0.0
87,989	-		GFF5874	0.15	-0.8
87,989	-		GFF5874	0.15	-0.1
87,999	+		GFF5874	0.16	+0.3
87,999	+		GFF5874	0.16	-0.1
87,999	+		GFF5874	0.16	-0.8
88,000	-		GFF5874	0.16	-0.1
88,060	-		GFF5874	0.23	+0.2
88,125	+		GFF5874	0.30	+0.7
88,125	+		GFF5874	0.30	+0.3
88,126	-		GFF5874	0.30	-0.9
88,126	-		GFF5874	0.30	-0.6
88,126	-		GFF5874	0.30	+0.1
88,209	+		GFF5874	0.39	+0.8
88,209	+		GFF5874	0.39	-0.3
88,209	+		GFF5874	0.39	-0.5
88,210	-		GFF5874	0.39	-0.0
88,210	-		GFF5874	0.39	-0.5
88,210	-		GFF5874	0.39	-0.1
88,210	-		GFF5874	0.39	+0.8
88,210	-		GFF5874	0.39	-1.1
88,269	+		GFF5874	0.46	-0.3
88,269	+		GFF5874	0.46	-0.5
88,269	+		GFF5874	0.46	+0.2
88,269	+		GFF5874	0.46	-0.3
88,269	+		GFF5874	0.46	-1.1
88,269	+		GFF5874	0.46	+0.3
88,269	+		GFF5874	0.46	+0.0
88,269	+		GFF5874	0.46	+0.7
88,269	+		GFF5874	0.46	-0.6
88,269	+		GFF5874	0.46	+0.2
88,270	-		GFF5874	0.46	+0.2
88,270	-		GFF5874	0.46	-0.2
88,270	-		GFF5874	0.46	+0.7
88,270	-		GFF5874	0.46	+0.7
88,270	-		GFF5874	0.46	+0.1
88,270	-		GFF5874	0.46	+0.2
88,270	-		GFF5874	0.46	-0.2
88,270	-		GFF5874	0.46	-0.5
88,270	-		GFF5874	0.46	+0.7
88,270	-		GFF5874	0.46	-0.1
88,270	-		GFF5874	0.46	+0.6
88,270	-		GFF5874	0.46	-1.1
88,270	-		GFF5874	0.46	-0.8
88,270	-		GFF5874	0.46	-0.8
88,270	-		GFF5874	0.46	+0.2
88,270	-		GFF5874	0.46	+0.4
88,297	-		GFF5874	0.49	-0.1
88,299	+		GFF5874	0.49	-1.0
88,299	+		GFF5874	0.49	-1.1
88,299	+		GFF5874	0.49	-0.2
88,299	+		GFF5874	0.49	+0.2
88,299	+		GFF5874	0.49	-0.7
88,299	+		GFF5874	0.49	-0.7
88,300	-		GFF5874	0.49	-0.1
88,300	-		GFF5874	0.49	-0.3
88,300	-		GFF5874	0.49	+1.7
88,383	+		GFF5874	0.59	-0.5
88,383	+		GFF5874	0.59	-0.2
88,383	+		GFF5874	0.59	+0.7
88,384	-		GFF5874	0.59	-0.2
88,384	-		GFF5874	0.59	-0.0
88,384	-		GFF5874	0.59	-0.1
88,384	-		GFF5874	0.59	-0.3
88,425	+		GFF5874	0.63	-0.7
88,425	+		GFF5874	0.63	+0.7
88,425	+		GFF5874	0.63	-1.2
88,425	+		GFF5874	0.63	-2.2
88,425	+		GFF5874	0.63	+0.9
88,425	+		GFF5874	0.63	+0.2
88,425	+		GFF5874	0.63	+0.8
88,425	+		GFF5874	0.63	-0.3
88,425	+		GFF5874	0.63	+0.1
88,425	+		GFF5874	0.63	-0.1
88,425	+		GFF5874	0.63	-0.2
88,425	+		GFF5874	0.63	-0.1
88,425	+		GFF5874	0.63	-0.1
88,425	+		GFF5874	0.63	+0.2
88,425	+		GFF5874	0.63	+0.1
88,426	-		GFF5874	0.63	-0.8
88,426	-		GFF5874	0.63	+0.0
88,426	-		GFF5874	0.63	-0.3
88,426	-		GFF5874	0.63	+1.1
88,426	-		GFF5874	0.63	+0.5
88,426	-		GFF5874	0.63	-1.0
88,426	-		GFF5874	0.63	-0.3
88,426	-		GFF5874	0.63	+0.1
88,426	-		GFF5874	0.63	+1.2
88,426	-		GFF5874	0.63	+0.4
88,426	-		GFF5874	0.63	-0.2
88,426	-		GFF5874	0.63	-0.3
88,442	+		GFF5874	0.65	+0.8
88,442	+		GFF5874	0.65	+0.4
88,442	+		GFF5874	0.65	+0.4
88,442	+		GFF5874	0.65	+2.7
88,442	+		GFF5874	0.65	-0.1
88,442	+		GFF5874	0.65	+0.0
88,443	-		GFF5874	0.65	-0.6
88,443	-		GFF5874	0.65	+0.9
88,443	-		GFF5874	0.65	-0.4
88,443	-		GFF5874	0.65	-0.8
88,443	-		GFF5874	0.65	-0.5
88,443	-		GFF5874	0.65	-1.0
88,443	-		GFF5874	0.65	-1.3
88,530	+		GFF5874	0.75	+0.1
88,530	+		GFF5874	0.75	-0.3
88,530	+		GFF5874	0.75	-0.7
88,530	+		GFF5874	0.75	-0.7
88,530	+		GFF5874	0.75	-0.5
88,530	+		GFF5874	0.75	-0.4
88,530	+		GFF5874	0.75	-1.0
88,530	+		GFF5874	0.75	-0.7
88,530	+		GFF5874	0.75	+0.7
88,531	-		GFF5874	0.75	-1.3
88,531	-		GFF5874	0.75	+0.1
88,609	+		GFF5874	0.84	+0.2
88,610	-		GFF5874	0.84	-0.2
88,610	-		GFF5874	0.84	+0.3
88,695	+				-0.0
88,695	+				-1.1
88,695	+				-0.3
88,695	+				+0.2
88,695	+				-0.1
88,695	+				-0.5
88,695	+				-0.3
88,696	-				-0.3
88,696	-				-1.5
88,696	-				-0.4
88,716	+				-0.0
88,716	+				-0.8
88,717	-				-0.0
88,765	+				-0.3
88,765	+				-0.2
88,766	-				-0.2
88,786	+				-0.4
88,787	-				-0.5
88,787	-				-0.7
88,787	-				-0.7
88,964	-				+1.1
89,687	+				-0.1
89,687	+				-0.4
89,688	-				-0.3
89,688	-				+1.7
89,688	-				-0.6
89,688	-				+0.2
89,703	+				-2.0
89,703	+				-0.7
89,703	+				-1.1
89,703	+				+0.2
89,703	+				+0.3
89,703	+				+0.9
89,703	+				-0.4
89,703	+				+0.4
89,703	+				-1.1
89,703	+				-0.6
89,703	+				-0.2
89,703	+				-0.4
89,704	-				-0.9
89,704	-				+0.4
89,704	-				-0.4
89,704	-				+0.5
89,704	-				-0.8
89,704	-				-1.0
89,704	-				+0.7
89,704	-				-2.1
89,704	-				+0.2
89,704	-				-0.1
89,704	-				-0.7
89,704	-				-0.8
89,704	-				-0.5
89,744	+				-1.1
89,744	+				-0.2
89,745	-				-0.6
89,745	-				-0.3
89,745	-				+1.3