Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5679 and GFF5680 are separated by 83 nucleotides GFF5680 and GFF5681 are separated by 22 nucleotides GFF5681 and GFF5682 overlap by 4 nucleotides
GFF5679 - Uncharacterized MFS-type transporter, at 53,618 to 54,955
GFF5679
GFF5680 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 55,039 to 55,725
GFF5680
GFF5681 - Predicted gluconate TRAP family transporter, DctM subunit, at 55,748 to 57,688
GFF5681
GFF5682 - TRAP-type transport system, periplasmic component, at 57,685 to 58,698
GFF5682
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.770 kb on + strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.770 kb on + strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.771 kb on - strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.776 kb on + strand, within GFF5679 at 54.777 kb on - strand, within GFF5679 at 54.777 kb on - strand, within GFF5679 at 54.777 kb on - strand, within GFF5679 at 54.777 kb on - strand, within GFF5679 at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.875 kb on + strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.876 kb on - strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.887 kb on + strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 54.888 kb on - strand at 55.026 kb on + strand at 55.026 kb on + strand at 55.026 kb on + strand at 55.027 kb on - strand at 55.027 kb on - strand at 55.027 kb on - strand at 55.027 kb on - strand at 55.027 kb on - strand at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.156 kb on + strand, within GFF5680 at 55.157 kb on - strand, within GFF5680 at 55.157 kb on - strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.486 kb on + strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.487 kb on - strand, within GFF5680 at 55.818 kb on + strand at 55.818 kb on + strand at 55.818 kb on + strand at 55.818 kb on + strand at 55.818 kb on + strand at 55.818 kb on + strand at 55.819 kb on - strand at 55.819 kb on - strand at 55.819 kb on - strand at 55.819 kb on - strand at 55.878 kb on + strand at 55.878 kb on + strand at 55.878 kb on + strand at 55.878 kb on + strand at 55.878 kb on + strand at 55.879 kb on - strand at 55.879 kb on - strand at 55.879 kb on - strand at 55.879 kb on - strand at 55.879 kb on - strand at 55.881 kb on + strand at 55.881 kb on + strand at 55.881 kb on + strand at 55.881 kb on + strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.882 kb on - strand at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.944 kb on + strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 55.945 kb on - strand, within GFF5681 at 56.015 kb on + strand, within GFF5681 at 56.247 kb on + strand, within GFF5681 at 56.247 kb on + strand, within GFF5681 at 56.248 kb on - strand, within GFF5681 at 56.248 kb on - strand, within GFF5681 at 56.274 kb on + strand, within GFF5681 at 56.275 kb on - strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.923 kb on - strand, within GFF5681 at 56.923 kb on - strand, within GFF5681 at 57.015 kb on - strand, within GFF5681 at 57.237 kb on + strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.285 kb on + strand, within GFF5681 at 57.285 kb on + strand, within GFF5681 at 57.285 kb on + strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.737 kb on + strand at 57.738 kb on - strand at 57.758 kb on + strand at 57.758 kb on + strand at 57.758 kb on + strand at 57.758 kb on + strand at 57.759 kb on - strand at 57.759 kb on - strand at 58.004 kb on + strand, within GFF5682 at 58.004 kb on + strand, within GFF5682 at 58.004 kb on + strand, within GFF5682 at 58.004 kb on + strand, within GFF5682 at 58.005 kb on - strand, within GFF5682 at 58.005 kb on - strand, within GFF5682 at 58.005 kb on - strand, within GFF5682 at 58.019 kb on + strand, within GFF5682 at 58.019 kb on + strand, within GFF5682 at 58.019 kb on + strand, within GFF5682 at 58.019 kb on + strand, within GFF5682 at 58.020 kb on - strand, within GFF5682 at 58.091 kb on + strand, within GFF5682 at 58.091 kb on + strand, within GFF5682 at 58.091 kb on + strand, within GFF5682 at 58.092 kb on - strand, within GFF5682 at 58.092 kb on - strand, within GFF5682 at 58.092 kb on - strand, within GFF5682 at 58.344 kb on - strand, within GFF5682 at 58.344 kb on - strand, within GFF5682 at 58.344 kb on - strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.598 kb on + strand at 58.598 kb on + strand at 58.598 kb on + strand at 58.598 kb on + strand at 58.598 kb on + strand at 58.599 kb on - strand at 58.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 54,770 + GFF5679 0.86 -0.6 54,770 + GFF5679 0.86 -0.5 54,770 + GFF5679 0.86 -0.5 54,770 + GFF5679 0.86 -1.3 54,770 + GFF5679 0.86 +0.2 54,771 - GFF5679 0.86 +0.5 54,771 - GFF5679 0.86 -0.7 54,771 - GFF5679 0.86 -0.3 54,771 - GFF5679 0.86 -0.1 54,771 - GFF5679 0.86 +1.2 54,776 + GFF5679 0.87 -0.2 54,776 + GFF5679 0.87 +0.8 54,776 + GFF5679 0.87 -0.8 54,776 + GFF5679 0.87 -0.7 54,776 + GFF5679 0.87 -0.5 54,776 + GFF5679 0.87 -1.1 54,777 - GFF5679 0.87 -0.2 54,777 - GFF5679 0.87 -0.4 54,777 - GFF5679 0.87 -0.7 54,777 - GFF5679 0.87 -0.1 54,875 + -0.3 54,875 + -0.5 54,875 + +0.1 54,875 + -0.5 54,875 + -1.2 54,875 + +0.1 54,875 + +0.5 54,876 - -0.2 54,876 - +1.6 54,876 - +1.0 54,876 - -0.7 54,876 - +0.2 54,876 - +0.7 54,876 - -0.5 54,876 - -0.3 54,876 - -0.4 54,876 - -2.1 54,876 - -0.5 54,876 - +0.6 54,887 + -0.5 54,887 + -0.6 54,887 + +1.0 54,887 + -0.4 54,887 + -0.2 54,887 + -0.5 54,887 + -0.1 54,887 + -0.5 54,887 + -0.1 54,888 - +1.4 54,888 - +0.3 54,888 - +0.4 54,888 - -1.0 54,888 - -0.3 54,888 - -0.2 54,888 - +1.0 54,888 - +0.6 54,888 - -1.6 55,026 + -0.5 55,026 + +0.3 55,026 + +0.3 55,027 - -0.4 55,027 - -0.7 55,027 - +0.2 55,027 - -1.5 55,027 - +1.0 55,156 + GFF5680 0.17 -0.3 55,156 + GFF5680 0.17 -1.8 55,156 + GFF5680 0.17 -0.2 55,156 + GFF5680 0.17 +0.3 55,156 + GFF5680 0.17 +0.2 55,156 + GFF5680 0.17 +0.6 55,156 + GFF5680 0.17 -1.0 55,156 + GFF5680 0.17 -0.4 55,156 + GFF5680 0.17 -0.7 55,157 - GFF5680 0.17 +0.6 55,157 - GFF5680 0.17 +0.5 55,486 + GFF5680 0.65 -0.2 55,486 + GFF5680 0.65 -0.1 55,486 + GFF5680 0.65 -1.3 55,486 + GFF5680 0.65 -0.0 55,486 + GFF5680 0.65 -0.4 55,487 - GFF5680 0.65 -0.3 55,487 - GFF5680 0.65 -0.6 55,487 - GFF5680 0.65 +1.3 55,487 - GFF5680 0.65 -0.5 55,487 - GFF5680 0.65 +0.0 55,487 - GFF5680 0.65 -1.0 55,818 + -1.0 55,818 + +1.0 55,818 + -0.4 55,818 + +0.0 55,818 + +0.2 55,818 + -0.5 55,819 - +0.6 55,819 - +0.1 55,819 - +0.8 55,819 - -0.2 55,878 + +0.3 55,878 + +0.1 55,878 + -1.0 55,878 + +0.2 55,878 + -0.3 55,879 - -0.8 55,879 - -0.5 55,879 - +0.9 55,879 - -1.5 55,879 - +0.6 55,881 + +0.4 55,881 + -2.1 55,881 + +0.7 55,881 + +0.0 55,882 - -0.5 55,882 - -0.0 55,882 - -1.0 55,882 - +1.8 55,882 - -0.2 55,882 - -0.5 55,944 + GFF5681 0.10 -2.4 55,944 + GFF5681 0.10 +0.2 55,944 + GFF5681 0.10 -0.0 55,944 + GFF5681 0.10 +0.9 55,944 + GFF5681 0.10 -0.2 55,944 + GFF5681 0.10 +0.3 55,944 + GFF5681 0.10 +0.2 55,944 + GFF5681 0.10 +0.3 55,944 + GFF5681 0.10 +0.6 55,945 - GFF5681 0.10 -1.0 55,945 - GFF5681 0.10 -0.9 55,945 - GFF5681 0.10 -0.6 55,945 - GFF5681 0.10 -0.1 55,945 - GFF5681 0.10 +0.2 55,945 - GFF5681 0.10 +0.2 55,945 - GFF5681 0.10 -0.3 55,945 - GFF5681 0.10 -0.8 55,945 - GFF5681 0.10 +0.8 55,945 - GFF5681 0.10 +0.4 56,015 + GFF5681 0.14 -0.2 56,247 + GFF5681 0.26 -0.2 56,247 + GFF5681 0.26 -0.5 56,248 - GFF5681 0.26 +0.7 56,248 - GFF5681 0.26 +0.3 56,274 + GFF5681 0.27 -0.9 56,275 - GFF5681 0.27 -0.3 56,709 + GFF5681 0.50 -1.0 56,709 + GFF5681 0.50 +0.5 56,709 + GFF5681 0.50 -1.4 56,709 + GFF5681 0.50 +0.1 56,710 - GFF5681 0.50 +0.6 56,710 - GFF5681 0.50 +0.6 56,710 - GFF5681 0.50 -0.1 56,710 - GFF5681 0.50 -0.3 56,730 + GFF5681 0.51 -0.2 56,730 + GFF5681 0.51 -0.4 56,730 + GFF5681 0.51 +0.4 56,730 + GFF5681 0.51 -0.3 56,730 + GFF5681 0.51 -0.6 56,730 + GFF5681 0.51 +0.0 56,730 + GFF5681 0.51 -0.5 56,730 + GFF5681 0.51 +0.0 56,730 + GFF5681 0.51 -1.0 56,730 + GFF5681 0.51 -0.7 56,730 + GFF5681 0.51 +1.6 56,923 - GFF5681 0.61 -0.7 56,923 - GFF5681 0.61 -0.7 57,015 - GFF5681 0.65 -0.1 57,237 + GFF5681 0.77 +0.1 57,238 - GFF5681 0.77 -2.0 57,238 - GFF5681 0.77 +0.2 57,238 - GFF5681 0.77 -0.2 57,238 - GFF5681 0.77 +0.6 57,238 - GFF5681 0.77 -0.3 57,238 - GFF5681 0.77 -0.3 57,238 - GFF5681 0.77 -0.1 57,285 + GFF5681 0.79 +0.6 57,285 + GFF5681 0.79 -0.1 57,285 + GFF5681 0.79 +0.3 57,286 - GFF5681 0.79 +0.1 57,286 - GFF5681 0.79 +1.2 57,286 - GFF5681 0.79 -0.5 57,286 - GFF5681 0.79 +0.3 57,286 - GFF5681 0.79 -0.1 57,286 - GFF5681 0.79 -0.1 57,286 - GFF5681 0.79 +0.4 57,737 + -0.0 57,738 - -0.6 57,758 + -0.3 57,758 + -0.3 57,758 + -0.5 57,758 + +0.4 57,759 - +2.0 57,759 - -0.3 58,004 + GFF5682 0.31 +0.0 58,004 + GFF5682 0.31 +0.2 58,004 + GFF5682 0.31 -0.7 58,004 + GFF5682 0.31 -0.7 58,005 - GFF5682 0.32 -1.5 58,005 - GFF5682 0.32 +0.2 58,005 - GFF5682 0.32 -0.7 58,019 + GFF5682 0.33 +0.7 58,019 + GFF5682 0.33 +0.0 58,019 + GFF5682 0.33 -0.1 58,019 + GFF5682 0.33 +0.6 58,020 - GFF5682 0.33 -1.0 58,091 + GFF5682 0.40 +0.7 58,091 + GFF5682 0.40 -0.2 58,091 + GFF5682 0.40 -0.4 58,092 - GFF5682 0.40 +0.1 58,092 - GFF5682 0.40 +0.9 58,092 - GFF5682 0.40 -0.1 58,344 - GFF5682 0.65 -0.1 58,344 - GFF5682 0.65 +0.4 58,344 - GFF5682 0.65 +0.2 58,592 + GFF5682 0.89 +0.9 58,592 + GFF5682 0.89 -1.8 58,592 + GFF5682 0.89 -0.2 58,592 + GFF5682 0.89 -0.8 58,592 + GFF5682 0.89 -0.7 58,593 - GFF5682 0.90 +0.9 58,593 - GFF5682 0.90 -0.8 58,593 - GFF5682 0.90 -0.2 58,593 - GFF5682 0.90 -0.5 58,593 - GFF5682 0.90 -1.0 58,593 - GFF5682 0.90 +0.2 58,593 - GFF5682 0.90 +0.0 58,593 - GFF5682 0.90 -0.2 58,593 - GFF5682 0.90 +0.6 58,593 - GFF5682 0.90 -1.0 58,598 + -0.4 58,598 + -0.2 58,598 + -1.2 58,598 + +0.5 58,598 + -1.4 58,599 - +1.2 58,599 - -0.6
Or see this region's nucleotide sequence