Strain Fitness in Variovorax sp. SCN45 around GFF5290

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5288 and GFF5289 overlap by 4 nucleotidesGFF5289 and GFF5290 are separated by 137 nucleotidesGFF5290 and GFF5291 are separated by 208 nucleotides GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672 GFF5288 GFF5289 - hypothetical protein, at 160,669 to 161,424 GFF5289 GFF5290 - hypothetical protein, at 161,562 to 161,909 GFF5290 GFF5291 - Ferrichrome-iron receptor, at 162,118 to 164,268 GFF5291 Position (kb) 161 162Strain fitness (log2 ratio) -2 -1 0 1at 160.652 kb on + strandat 160.667 kb on + strandat 160.667 kb on + strandat 160.667 kb on + strandat 160.667 kb on + strandat 160.667 kb on + strandat 160.667 kb on + strandat 160.668 kb on - strandat 160.668 kb on - strandat 160.668 kb on - strandat 160.668 kb on - strandat 160.668 kb on - strandat 160.668 kb on - strandat 160.670 kb on + strandat 160.670 kb on + strandat 160.671 kb on - strandat 160.757 kb on + strand, within GFF5289at 161.351 kb on + strandat 161.352 kb on - strandat 161.584 kb on + strandat 161.585 kb on - strandat 161.585 kb on - strandat 161.585 kb on - strandat 161.585 kb on - strandat 161.677 kb on - strand, within GFF5290at 161.677 kb on - strand, within GFF5290at 161.727 kb on + strand, within GFF5290at 161.727 kb on + strand, within GFF5290at 161.727 kb on + strand, within GFF5290at 161.727 kb on + strand, within GFF5290at 161.728 kb on - strand, within GFF5290at 161.728 kb on - strand, within GFF5290at 161.728 kb on - strand, within GFF5290at 161.728 kb on - strand, within GFF5290at 161.920 kb on + strandat 161.921 kb on - strandat 161.924 kb on - strandat 161.924 kb on - strandat 162.012 kb on - strandat 162.027 kb on + strandat 162.027 kb on + strandat 162.028 kb on - strandat 162.040 kb on + strandat 162.040 kb on + strandat 162.040 kb on + strandat 162.041 kb on - strandat 162.041 kb on - strandat 162.041 kb on - strandat 162.041 kb on - strandat 162.074 kb on - strandat 162.258 kb on + strandat 162.258 kb on + strandat 162.258 kb on + strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.517 kb on + strand, within GFF5291at 162.517 kb on + strand, within GFF5291at 162.517 kb on + strand, within GFF5291at 162.518 kb on - strand, within GFF5291at 162.520 kb on + strand, within GFF5291at 162.521 kb on - strand, within GFF5291at 162.521 kb on - strand, within GFF5291at 162.521 kb on - strand, within GFF5291at 162.533 kb on - strand, within GFF5291at 162.673 kb on + strand, within GFF5291at 162.673 kb on + strand, within GFF5291at 162.673 kb on + strand, within GFF5291at 162.748 kb on + strand, within GFF5291at 162.748 kb on + strand, within GFF5291at 162.748 kb on + strand, within GFF5291at 162.748 kb on + strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.766 kb on + strand, within GFF5291at 162.767 kb on - strand, within GFF5291at 162.767 kb on - strand, within GFF5291at 162.854 kb on - strand, within GFF5291at 162.854 kb on - strand, within GFF5291at 162.854 kb on - strand, within GFF5291at 162.877 kb on - strand, within GFF5291

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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160,652 + -0.6
160,667 + -0.1
160,667 + -0.7
160,667 + -1.3
160,667 + +0.2
160,667 + -0.6
160,667 + -0.1
160,668 - -0.3
160,668 - -0.2
160,668 - -0.8
160,668 - +0.7
160,668 - +0.2
160,668 - -0.2
160,670 + -0.7
160,670 + -0.3
160,671 - -0.5
160,757 + GFF5289 0.12 +0.1
161,351 + -0.5
161,352 - -0.7
161,584 + +0.5
161,585 - +0.0
161,585 - +1.4
161,585 - +0.5
161,585 - -2.6
161,677 - GFF5290 0.33 +0.1
161,677 - GFF5290 0.33 +0.5
161,727 + GFF5290 0.47 -0.5
161,727 + GFF5290 0.47 +0.5
161,727 + GFF5290 0.47 -1.3
161,727 + GFF5290 0.47 -0.3
161,728 - GFF5290 0.48 -0.2
161,728 - GFF5290 0.48 +1.5
161,728 - GFF5290 0.48 -0.5
161,728 - GFF5290 0.48 -0.4
161,920 + -0.2
161,921 - -0.3
161,924 - -0.5
161,924 - -1.0
162,012 - -0.6
162,027 + +0.5
162,027 + -0.1
162,028 - +0.3
162,040 + +0.6
162,040 + -1.0
162,040 + -1.0
162,041 - +1.3
162,041 - -1.6
162,041 - +0.3
162,041 - -0.6
162,074 - -0.1
162,258 + -1.3
162,258 + -0.8
162,258 + +0.4
162,259 - -0.8
162,259 - +0.4
162,517 + GFF5291 0.19 +0.6
162,517 + GFF5291 0.19 +0.2
162,517 + GFF5291 0.19 -0.4
162,518 - GFF5291 0.19 -0.4
162,520 + GFF5291 0.19 -0.2
162,521 - GFF5291 0.19 +0.3
162,521 - GFF5291 0.19 +0.6
162,521 - GFF5291 0.19 +0.1
162,533 - GFF5291 0.19 -1.0
162,673 + GFF5291 0.26 -0.4
162,673 + GFF5291 0.26 +0.0
162,673 + GFF5291 0.26 +0.2
162,748 + GFF5291 0.29 +0.1
162,748 + GFF5291 0.29 -0.7
162,748 + GFF5291 0.29 +0.1
162,748 + GFF5291 0.29 -0.3
162,749 - GFF5291 0.29 -0.7
162,749 - GFF5291 0.29 -0.3
162,749 - GFF5291 0.29 -0.3
162,749 - GFF5291 0.29 +0.0
162,749 - GFF5291 0.29 -0.5
162,749 - GFF5291 0.29 -0.2
162,766 + GFF5291 0.30 -0.5
162,767 - GFF5291 0.30 -0.6
162,767 - GFF5291 0.30 +0.9
162,854 - GFF5291 0.34 -0.2
162,854 - GFF5291 0.34 +0.5
162,854 - GFF5291 0.34 +0.2
162,877 - GFF5291 0.35 -0.1

Or see this region's nucleotide sequence