Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5090 and GFF5091 overlap by 4 nucleotides GFF5091 and GFF5092 overlap by 4 nucleotides GFF5092 and GFF5093 overlap by 4 nucleotides
GFF5090 - Homoprotocatechuate degradative operon repressor, at 193,738 to 194,175
GFF5090
GFF5091 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68), at 194,172 to 194,804
GFF5091
GFF5092 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 194,801 to 195,583
GFF5092
GFF5093 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 195,580 to 197,043
GFF5093
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1 at 194.081 kb on - strand, within GFF5090 at 194.081 kb on - strand, within GFF5090 at 194.129 kb on - strand, within GFF5090 at 194.177 kb on + strand at 194.177 kb on + strand at 194.177 kb on + strand at 194.177 kb on + strand at 194.177 kb on + strand at 194.177 kb on + strand at 194.177 kb on + strand at 194.177 kb on + strand at 194.178 kb on - strand at 194.178 kb on - strand at 194.178 kb on - strand at 194.178 kb on - strand at 194.178 kb on - strand at 194.208 kb on + strand at 194.208 kb on + strand at 194.208 kb on + strand at 194.209 kb on - strand at 194.209 kb on - strand at 194.209 kb on - strand at 194.274 kb on + strand, within GFF5091 at 194.275 kb on - strand, within GFF5091 at 194.822 kb on + strand at 194.822 kb on + strand at 194.822 kb on + strand at 194.823 kb on - strand at 194.823 kb on - strand at 194.823 kb on - strand at 195.116 kb on + strand, within GFF5092 at 195.117 kb on - strand, within GFF5092 at 195.117 kb on - strand, within GFF5092 at 195.117 kb on - strand, within GFF5092 at 195.179 kb on + strand, within GFF5092 at 195.198 kb on - strand, within GFF5092 at 195.215 kb on + strand, within GFF5092 at 195.215 kb on + strand, within GFF5092 at 195.215 kb on + strand, within GFF5092 at 195.216 kb on - strand, within GFF5092 at 195.277 kb on + strand, within GFF5092 at 195.277 kb on + strand, within GFF5092 at 195.425 kb on + strand, within GFF5092 at 195.628 kb on + strand at 195.629 kb on - strand at 195.629 kb on - strand at 195.629 kb on - strand at 195.854 kb on + strand, within GFF5093 at 195.854 kb on + strand, within GFF5093 at 195.901 kb on + strand, within GFF5093 at 195.902 kb on - strand, within GFF5093 at 195.902 kb on - strand, within GFF5093 at 195.905 kb on - strand, within GFF5093 at 195.943 kb on + strand, within GFF5093 at 195.944 kb on - strand, within GFF5093 at 195.944 kb on - strand, within GFF5093 at 195.967 kb on + strand, within GFF5093 at 195.968 kb on - strand, within GFF5093 at 195.968 kb on - strand, within GFF5093 at 196.567 kb on + strand, within GFF5093 at 196.568 kb on - strand, within GFF5093
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 194,081 - GFF5090 0.78 +0.5 194,081 - GFF5090 0.78 -0.6 194,129 - GFF5090 0.89 -0.8 194,177 + -0.8 194,177 + +0.5 194,177 + -0.1 194,177 + +0.5 194,177 + +1.2 194,177 + -0.0 194,177 + -0.2 194,177 + +0.4 194,178 - +0.4 194,178 - -2.6 194,178 - +0.4 194,178 - +0.1 194,178 - -0.1 194,208 + -0.0 194,208 + -0.1 194,208 + -0.4 194,209 - -0.3 194,209 - -0.2 194,209 - -0.2 194,274 + GFF5091 0.16 -0.4 194,275 - GFF5091 0.16 -1.4 194,822 + -0.3 194,822 + +0.5 194,822 + -1.8 194,823 - -0.2 194,823 - +0.1 194,823 - +0.8 195,116 + GFF5092 0.40 -0.9 195,117 - GFF5092 0.40 -0.5 195,117 - GFF5092 0.40 -0.9 195,117 - GFF5092 0.40 -1.3 195,179 + GFF5092 0.48 -0.9 195,198 - GFF5092 0.51 -1.1 195,215 + GFF5092 0.53 -1.8 195,215 + GFF5092 0.53 -1.1 195,215 + GFF5092 0.53 -0.5 195,216 - GFF5092 0.53 -0.4 195,277 + GFF5092 0.61 -0.5 195,277 + GFF5092 0.61 +0.4 195,425 + GFF5092 0.80 -0.0 195,628 + -0.1 195,629 - +0.5 195,629 - -0.7 195,629 - +0.4 195,854 + GFF5093 0.19 +1.3 195,854 + GFF5093 0.19 +0.1 195,901 + GFF5093 0.22 +0.1 195,902 - GFF5093 0.22 -0.7 195,902 - GFF5093 0.22 +0.1 195,905 - GFF5093 0.22 +0.2 195,943 + GFF5093 0.25 +1.0 195,944 - GFF5093 0.25 +0.1 195,944 - GFF5093 0.25 -0.3 195,967 + GFF5093 0.26 -0.3 195,968 - GFF5093 0.27 -0.8 195,968 - GFF5093 0.27 -0.7 196,567 + GFF5093 0.67 -0.1 196,568 - GFF5093 0.67 +1.5
Or see this region's nucleotide sequence