Strain Fitness in Variovorax sp. SCN45 around GFF5036

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5035 and GFF5036 overlap by 4 nucleotidesGFF5036 and GFF5037 are separated by 21 nucleotides GFF5035 - Opine oxidase subunit A, at 134,905 to 136,302 GFF5035 GFF5036 - Opine oxidase subunit B, at 136,299 to 137,462 GFF5036 GFF5037 - ABC transporter spermidine/putrescine-binding protein, at 137,484 to 138,536 GFF5037 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1at 135.313 kb on + strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.404 kb on - strand, within GFF5035at 135.404 kb on - strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.421 kb on + strand, within GFF5035at 135.421 kb on + strand, within GFF5035at 135.422 kb on - strand, within GFF5035at 135.422 kb on - strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.758 kb on + strand, within GFF5035at 135.759 kb on - strand, within GFF5035at 135.759 kb on - strand, within GFF5035at 135.817 kb on + strand, within GFF5035at 135.818 kb on - strand, within GFF5035at 136.557 kb on + strand, within GFF5036at 136.557 kb on + strand, within GFF5036at 136.557 kb on + strand, within GFF5036at 136.558 kb on - strand, within GFF5036at 136.621 kb on - strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.238 kb on + strand, within GFF5036at 137.238 kb on + strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.614 kb on - strand, within GFF5037at 137.614 kb on - strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.649 kb on + strand, within GFF5037at 137.650 kb on - strand, within GFF5037at 137.826 kb on + strand, within GFF5037at 137.826 kb on + strand, within GFF5037at 137.827 kb on - strand, within GFF5037at 137.827 kb on - strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.231 kb on + strand, within GFF5037at 138.231 kb on + strand, within GFF5037at 138.232 kb on - strand, within GFF5037at 138.366 kb on + strand, within GFF5037at 138.367 kb on - strand, within GFF5037

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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135,313 + GFF5035 0.29 -2.3
135,314 - GFF5035 0.29 +0.4
135,314 - GFF5035 0.29 +0.1
135,314 - GFF5035 0.29 +0.7
135,314 - GFF5035 0.29 -0.5
135,314 - GFF5035 0.29 -1.1
135,314 - GFF5035 0.29 +0.1
135,403 + GFF5035 0.36 -1.3
135,403 + GFF5035 0.36 -2.2
135,403 + GFF5035 0.36 +1.3
135,403 + GFF5035 0.36 -0.3
135,403 + GFF5035 0.36 +0.1
135,403 + GFF5035 0.36 -1.8
135,404 - GFF5035 0.36 -0.2
135,404 - GFF5035 0.36 -1.4
135,415 + GFF5035 0.36 -0.7
135,415 + GFF5035 0.36 +0.1
135,415 + GFF5035 0.36 -1.1
135,415 + GFF5035 0.36 -0.9
135,416 - GFF5035 0.37 +0.1
135,416 - GFF5035 0.37 -1.7
135,416 - GFF5035 0.37 -0.5
135,421 + GFF5035 0.37 +0.4
135,421 + GFF5035 0.37 -1.0
135,422 - GFF5035 0.37 -0.9
135,422 - GFF5035 0.37 +0.4
135,535 + GFF5035 0.45 +0.7
135,535 + GFF5035 0.45 +0.0
135,535 + GFF5035 0.45 -0.4
135,535 + GFF5035 0.45 +0.7
135,535 + GFF5035 0.45 +0.1
135,535 + GFF5035 0.45 +0.7
135,535 + GFF5035 0.45 -0.7
135,536 - GFF5035 0.45 -2.3
135,536 - GFF5035 0.45 +0.1
135,536 - GFF5035 0.45 +0.7
135,536 - GFF5035 0.45 -0.6
135,536 - GFF5035 0.45 -0.3
135,538 + GFF5035 0.45 -1.3
135,538 + GFF5035 0.45 +0.2
135,538 + GFF5035 0.45 -1.0
135,538 + GFF5035 0.45 +0.1
135,539 - GFF5035 0.45 +0.7
135,539 - GFF5035 0.45 -0.9
135,539 - GFF5035 0.45 +0.1
135,539 - GFF5035 0.45 -0.3
135,539 - GFF5035 0.45 -0.5
135,539 - GFF5035 0.45 -0.7
135,539 - GFF5035 0.45 -0.5
135,539 - GFF5035 0.45 -2.1
135,719 + GFF5035 0.58 +0.3
135,719 + GFF5035 0.58 +0.7
135,719 + GFF5035 0.58 +0.1
135,758 + GFF5035 0.61 -0.9
135,759 - GFF5035 0.61 -1.4
135,759 - GFF5035 0.61 -2.2
135,817 + GFF5035 0.65 -0.6
135,818 - GFF5035 0.65 -0.3
136,557 + GFF5036 0.22 -0.4
136,557 + GFF5036 0.22 -0.7
136,557 + GFF5036 0.22 +0.4
136,558 - GFF5036 0.22 -0.7
136,621 - GFF5036 0.28 -3.2
137,058 + GFF5036 0.65 -1.9
137,058 + GFF5036 0.65 -1.6
137,058 + GFF5036 0.65 -0.1
137,059 - GFF5036 0.65 -0.3
137,059 - GFF5036 0.65 -0.7
137,059 - GFF5036 0.65 +1.3
137,238 + GFF5036 0.81 -0.3
137,238 + GFF5036 0.81 -0.9
137,239 - GFF5036 0.81 -1.1
137,239 - GFF5036 0.81 -0.7
137,239 - GFF5036 0.81 -1.8
137,239 - GFF5036 0.81 -0.6
137,577 + -0.6
137,577 + -1.2
137,577 + -0.9
137,577 + -0.3
137,577 + -0.3
137,577 + +0.3
137,577 + -0.5
137,577 + -0.1
137,577 + -0.8
137,577 + +0.6
137,577 + -0.5
137,577 + -0.6
137,577 + -0.1
137,577 + -1.0
137,578 - -1.1
137,578 - +1.3
137,578 - +1.7
137,578 - +0.0
137,578 - -0.8
137,613 + GFF5037 0.12 -0.2
137,613 + GFF5037 0.12 +0.5
137,613 + GFF5037 0.12 -2.1
137,613 + GFF5037 0.12 +1.3
137,614 - GFF5037 0.12 -0.1
137,614 - GFF5037 0.12 +0.7
137,622 + GFF5037 0.13 +0.3
137,622 + GFF5037 0.13 -0.5
137,622 + GFF5037 0.13 -1.4
137,622 + GFF5037 0.13 -0.6
137,622 + GFF5037 0.13 +1.1
137,622 + GFF5037 0.13 -1.5
137,622 + GFF5037 0.13 +0.3
137,622 + GFF5037 0.13 -0.4
137,622 + GFF5037 0.13 -0.3
137,623 - GFF5037 0.13 -0.3
137,623 - GFF5037 0.13 +1.0
137,623 - GFF5037 0.13 -1.3
137,623 - GFF5037 0.13 -0.6
137,623 - GFF5037 0.13 +0.1
137,623 - GFF5037 0.13 +0.7
137,623 - GFF5037 0.13 -0.6
137,623 - GFF5037 0.13 -0.2
137,623 - GFF5037 0.13 +0.1
137,623 - GFF5037 0.13 -0.0
137,649 + GFF5037 0.16 +0.4
137,650 - GFF5037 0.16 -0.1
137,826 + GFF5037 0.32 +0.6
137,826 + GFF5037 0.32 -0.5
137,827 - GFF5037 0.33 +0.5
137,827 - GFF5037 0.33 +0.1
137,892 + GFF5037 0.39 -0.8
137,892 + GFF5037 0.39 -0.1
137,892 + GFF5037 0.39 -0.1
137,893 - GFF5037 0.39 +0.1
137,893 - GFF5037 0.39 -0.1
137,893 - GFF5037 0.39 -0.4
137,893 - GFF5037 0.39 +0.1
137,893 - GFF5037 0.39 -1.0
137,964 + GFF5037 0.46 +0.4
137,964 + GFF5037 0.46 -0.3
137,964 + GFF5037 0.46 -0.5
137,964 + GFF5037 0.46 -0.3
137,964 + GFF5037 0.46 -0.3
137,964 + GFF5037 0.46 -0.7
137,964 + GFF5037 0.46 +0.3
137,964 + GFF5037 0.46 +0.0
137,964 + GFF5037 0.46 +0.9
137,964 + GFF5037 0.46 -0.3
137,964 + GFF5037 0.46 +0.5
137,965 - GFF5037 0.46 -0.4
137,965 - GFF5037 0.46 +0.0
137,965 - GFF5037 0.46 +1.7
137,965 - GFF5037 0.46 -0.3
138,117 + GFF5037 0.60 +0.0
138,117 + GFF5037 0.60 -0.2
138,117 + GFF5037 0.60 -0.4
138,117 + GFF5037 0.60 -1.3
138,118 - GFF5037 0.60 +0.1
138,118 - GFF5037 0.60 -1.3
138,118 - GFF5037 0.60 -0.1
138,118 - GFF5037 0.60 +1.0
138,118 - GFF5037 0.60 +0.2
138,118 - GFF5037 0.60 -0.6
138,118 - GFF5037 0.60 -0.3
138,118 - GFF5037 0.60 -0.4
138,118 - GFF5037 0.60 -1.3
138,118 - GFF5037 0.60 +1.1
138,118 - GFF5037 0.60 -0.2
138,231 + GFF5037 0.71 -0.4
138,231 + GFF5037 0.71 -0.1
138,232 - GFF5037 0.71 -0.5
138,366 + GFF5037 0.84 +0.7
138,367 - GFF5037 0.84 +0.7

Or see this region's nucleotide sequence