Strain Fitness in Variovorax sp. SCN45 around GFF4914

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4913 and GFF4914 are separated by 13 nucleotidesGFF4914 and GFF4915 are separated by 44 nucleotides GFF4913 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,988 to 6,715 GFF4913 GFF4914 - Luciferase-like monooxygenase YhbW, at 6,729 to 7,727 GFF4914 GFF4915 - hypothetical protein, at 7,772 to 9,454 GFF4915 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 6.282 kb on - strand, within GFF4913at 6.329 kb on + strand, within GFF4913at 6.330 kb on - strand, within GFF4913at 6.371 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.419 kb on + strand, within GFF4913at 6.419 kb on + strand, within GFF4913at 6.420 kb on - strand, within GFF4913at 6.420 kb on - strand, within GFF4913at 6.429 kb on - strand, within GFF4913at 6.429 kb on - strand, within GFF4913at 6.455 kb on + strand, within GFF4913at 6.455 kb on + strand, within GFF4913at 6.455 kb on + strand, within GFF4913at 6.455 kb on + strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.730 kb on + strandat 6.730 kb on + strandat 6.730 kb on + strandat 6.730 kb on + strandat 6.730 kb on + strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.775 kb on + strandat 6.775 kb on + strandat 6.775 kb on + strandat 6.776 kb on - strandat 6.776 kb on - strandat 6.776 kb on - strandat 6.952 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.184 kb on - strand, within GFF4914at 7.184 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.609 kb on + strand, within GFF4914at 7.609 kb on + strand, within GFF4914at 7.610 kb on - strand, within GFF4914at 7.618 kb on + strand, within GFF4914at 7.619 kb on - strand, within GFF4914at 7.619 kb on - strand, within GFF4914at 7.701 kb on + strandat 7.701 kb on + strandat 7.702 kb on - strandat 7.702 kb on - strandat 7.774 kb on - strandat 7.785 kb on + strandat 7.785 kb on + strandat 7.786 kb on - strandat 7.786 kb on - strandat 7.786 kb on - strandat 7.787 kb on + strandat 7.787 kb on + strandat 7.787 kb on + strandat 7.787 kb on + strandat 7.787 kb on + strandat 7.788 kb on - strandat 7.788 kb on - strandat 7.788 kb on - strandat 7.788 kb on - strandat 7.788 kb on - strandat 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 8.187 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.517 kb on + strand, within GFF4915at 8.517 kb on + strand, within GFF4915at 8.529 kb on + strand, within GFF4915at 8.530 kb on - strand, within GFF4915at 8.664 kb on + strand, within GFF4915at 8.664 kb on + strand, within GFF4915at 8.664 kb on + strand, within GFF4915

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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5,729 + GFF4913 0.43 -0.6
5,729 + GFF4913 0.43 -0.1
5,729 + GFF4913 0.43 +0.7
5,729 + GFF4913 0.43 -0.2
5,729 + GFF4913 0.43 -0.3
5,729 + GFF4913 0.43 -1.2
5,729 + GFF4913 0.43 +0.0
5,729 + GFF4913 0.43 -0.9
5,730 - GFF4913 0.43 -0.4
5,730 - GFF4913 0.43 +0.3
5,730 - GFF4913 0.43 -0.4
5,730 - GFF4913 0.43 +0.2
5,730 - GFF4913 0.43 -0.3
5,730 - GFF4913 0.43 -2.0
5,730 - GFF4913 0.43 +0.9
5,948 + GFF4913 0.56 +0.3
5,948 + GFF4913 0.56 +0.5
5,948 + GFF4913 0.56 +0.1
5,948 + GFF4913 0.56 +0.4
5,948 + GFF4913 0.56 -1.5
5,948 + GFF4913 0.56 -0.3
5,948 + GFF4913 0.56 -1.1
5,948 + GFF4913 0.56 -0.2
5,948 + GFF4913 0.56 -0.9
5,948 + GFF4913 0.56 +0.7
5,948 + GFF4913 0.56 -0.8
5,948 + GFF4913 0.56 +0.5
5,948 + GFF4913 0.56 -0.4
5,949 - GFF4913 0.56 -1.5
5,949 - GFF4913 0.56 -1.5
5,949 - GFF4913 0.56 -0.3
5,949 - GFF4913 0.56 -0.1
5,949 - GFF4913 0.56 -0.1
5,949 - GFF4913 0.56 +0.1
5,949 - GFF4913 0.56 +1.5
5,949 - GFF4913 0.56 -1.9
5,949 - GFF4913 0.56 -0.6
5,949 - GFF4913 0.56 +0.4
6,282 - GFF4913 0.75 -0.3
6,329 + GFF4913 0.78 -0.8
6,330 - GFF4913 0.78 -0.0
6,371 + GFF4913 0.80 -0.6
6,377 + GFF4913 0.80 -0.4
6,377 + GFF4913 0.80 -0.2
6,377 + GFF4913 0.80 +0.4
6,377 + GFF4913 0.80 -1.1
6,377 + GFF4913 0.80 +1.0
6,377 + GFF4913 0.80 +0.1
6,377 + GFF4913 0.80 -0.4
6,377 + GFF4913 0.80 -2.8
6,377 + GFF4913 0.80 +0.9
6,377 + GFF4913 0.80 -0.1
6,378 - GFF4913 0.80 +0.2
6,378 - GFF4913 0.80 +0.1
6,378 - GFF4913 0.80 +0.2
6,378 - GFF4913 0.80 +0.9
6,378 - GFF4913 0.80 +0.9
6,378 - GFF4913 0.80 -0.5
6,378 - GFF4913 0.80 -0.3
6,378 - GFF4913 0.80 +0.1
6,378 - GFF4913 0.80 -0.3
6,378 - GFF4913 0.80 +0.4
6,378 - GFF4913 0.80 +0.1
6,378 - GFF4913 0.80 -0.0
6,419 + GFF4913 0.83 -0.8
6,419 + GFF4913 0.83 -1.0
6,420 - GFF4913 0.83 -0.1
6,420 - GFF4913 0.83 +0.2
6,429 - GFF4913 0.83 +1.0
6,429 - GFF4913 0.83 -0.1
6,455 + GFF4913 0.85 -0.7
6,455 + GFF4913 0.85 -1.6
6,455 + GFF4913 0.85 +0.2
6,455 + GFF4913 0.85 -0.1
6,456 - GFF4913 0.85 -0.5
6,456 - GFF4913 0.85 +0.9
6,456 - GFF4913 0.85 -0.6
6,456 - GFF4913 0.85 +1.0
6,456 - GFF4913 0.85 -0.1
6,730 + -0.3
6,730 + -0.2
6,730 + +0.7
6,730 + -0.8
6,730 + +0.0
6,731 - +0.1
6,731 - -0.5
6,731 - +0.6
6,731 - +0.5
6,731 - -0.0
6,731 - -0.2
6,731 - -0.7
6,731 - +0.5
6,731 - +0.3
6,775 + -0.2
6,775 + +0.4
6,775 + -0.4
6,776 - +0.3
6,776 - -0.6
6,776 - +0.6
6,952 + GFF4914 0.22 -0.8
7,087 + GFF4914 0.36 +0.1
7,087 + GFF4914 0.36 +0.1
7,087 + GFF4914 0.36 -0.4
7,087 + GFF4914 0.36 +0.3
7,087 + GFF4914 0.36 -0.6
7,087 + GFF4914 0.36 +0.7
7,088 - GFF4914 0.36 +0.1
7,088 - GFF4914 0.36 -0.5
7,088 - GFF4914 0.36 -0.3
7,129 + GFF4914 0.40 -0.9
7,129 + GFF4914 0.40 +0.4
7,129 + GFF4914 0.40 -0.1
7,129 + GFF4914 0.40 +0.2
7,129 + GFF4914 0.40 -0.3
7,129 + GFF4914 0.40 -0.8
7,183 + GFF4914 0.45 +0.4
7,183 + GFF4914 0.45 -0.3
7,183 + GFF4914 0.45 +1.3
7,183 + GFF4914 0.45 -0.6
7,183 + GFF4914 0.45 +0.5
7,184 - GFF4914 0.46 +0.6
7,184 - GFF4914 0.46 -0.7
7,436 - GFF4914 0.71 -0.2
7,436 - GFF4914 0.71 -0.5
7,436 - GFF4914 0.71 -0.1
7,436 - GFF4914 0.71 -0.3
7,609 + GFF4914 0.88 +0.4
7,609 + GFF4914 0.88 -0.6
7,610 - GFF4914 0.88 +0.1
7,618 + GFF4914 0.89 -0.3
7,619 - GFF4914 0.89 +1.0
7,619 - GFF4914 0.89 +0.3
7,701 + -0.3
7,701 + -1.2
7,702 - -0.3
7,702 - -0.1
7,774 - +0.9
7,785 + +0.3
7,785 + -0.8
7,786 - +0.1
7,786 - +1.3
7,786 - -0.1
7,787 + +0.3
7,787 + +1.2
7,787 + +0.0
7,787 + -0.6
7,787 + +1.4
7,788 - -0.9
7,788 - -0.2
7,788 - +0.4
7,788 - +1.1
7,788 - -0.4
7,998 + GFF4915 0.13 -0.3
7,998 + GFF4915 0.13 -1.4
7,998 + GFF4915 0.13 +0.4
7,998 + GFF4915 0.13 +0.1
7,998 + GFF4915 0.13 +0.7
7,998 + GFF4915 0.13 +0.3
7,998 + GFF4915 0.13 +1.2
7,998 + GFF4915 0.13 -0.0
7,998 + GFF4915 0.13 -2.1
7,998 + GFF4915 0.13 -0.4
7,999 - GFF4915 0.13 -0.5
7,999 - GFF4915 0.13 +0.2
7,999 - GFF4915 0.13 -1.1
7,999 - GFF4915 0.13 -0.3
7,999 - GFF4915 0.13 -0.7
7,999 - GFF4915 0.13 -0.9
8,187 + GFF4915 0.25 -1.5
8,193 + GFF4915 0.25 -0.5
8,193 + GFF4915 0.25 -0.0
8,193 + GFF4915 0.25 +0.0
8,193 + GFF4915 0.25 -0.3
8,193 + GFF4915 0.25 +1.5
8,193 + GFF4915 0.25 -0.4
8,194 - GFF4915 0.25 +0.1
8,194 - GFF4915 0.25 +0.0
8,194 - GFF4915 0.25 -1.8
8,194 - GFF4915 0.25 +0.7
8,194 - GFF4915 0.25 -0.2
8,194 - GFF4915 0.25 -0.3
8,194 - GFF4915 0.25 -0.4
8,517 + GFF4915 0.44 -0.0
8,517 + GFF4915 0.44 -0.5
8,529 + GFF4915 0.45 +0.0
8,530 - GFF4915 0.45 +1.5
8,664 + GFF4915 0.53 -0.8
8,664 + GFF4915 0.53 +0.4
8,664 + GFF4915 0.53 -0.4

Or see this region's nucleotide sequence