Strain Fitness in Variovorax sp. SCN45 around GFF4811

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4810 and GFF4811 are separated by 263 nucleotides GFF4810 - Ferrichrome-iron receptor, at 178,414 to 180,603 GFF4810 GFF4811 - FIG074102: hypothetical protein, at 180,867 to 181,958 GFF4811 Position (kb) 180 181 182Strain fitness (log2 ratio) -1 0 1 2at 179.924 kb on + strand, within GFF4810at 180.128 kb on + strand, within GFF4810at 180.128 kb on + strand, within GFF4810at 180.129 kb on - strand, within GFF4810at 180.129 kb on - strand, within GFF4810at 180.152 kb on + strand, within GFF4810at 180.152 kb on + strand, within GFF4810at 180.153 kb on - strand, within GFF4810at 180.153 kb on - strand, within GFF4810at 180.153 kb on - strand, within GFF4810at 180.153 kb on - strand, within GFF4810at 180.162 kb on - strand, within GFF4810at 180.162 kb on - strand, within GFF4810at 180.162 kb on - strand, within GFF4810at 180.162 kb on - strand, within GFF4810at 180.186 kb on - strand, within GFF4810at 180.239 kb on + strand, within GFF4810at 180.240 kb on - strand, within GFF4810at 180.263 kb on + strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.264 kb on - strand, within GFF4810at 180.854 kb on - strandat 180.854 kb on - strandat 181.042 kb on + strand, within GFF4811at 181.043 kb on - strand, within GFF4811at 181.075 kb on + strand, within GFF4811at 181.075 kb on + strand, within GFF4811at 181.091 kb on - strand, within GFF4811at 181.091 kb on - strand, within GFF4811at 181.091 kb on - strand, within GFF4811at 181.091 kb on - strand, within GFF4811at 181.330 kb on + strand, within GFF4811at 181.330 kb on + strand, within GFF4811at 181.331 kb on - strand, within GFF4811at 181.331 kb on - strand, within GFF4811at 181.331 kb on - strand, within GFF4811at 181.451 kb on - strand, within GFF4811at 181.499 kb on - strand, within GFF4811at 181.550 kb on - strand, within GFF4811at 181.550 kb on - strand, within GFF4811at 181.621 kb on + strand, within GFF4811at 181.622 kb on - strand, within GFF4811at 181.723 kb on + strand, within GFF4811at 181.723 kb on + strand, within GFF4811at 181.724 kb on - strand, within GFF4811at 182.076 kb on + strandat 182.198 kb on - strandat 182.376 kb on + strandat 182.423 kb on - strandat 182.432 kb on - strandat 182.432 kb on - strandat 182.434 kb on - strandat 182.824 kb on + strandat 182.824 kb on + strandat 182.824 kb on + strandat 182.825 kb on - strandat 182.825 kb on - strandat 182.825 kb on - strandat 182.825 kb on - strandat 182.825 kb on - strandat 182.872 kb on - strandat 182.878 kb on + strandat 182.878 kb on + strandat 182.879 kb on - strandat 182.885 kb on + strandat 182.886 kb on - strandat 182.886 kb on - strandat 182.953 kb on - strandat 182.953 kb on - strandat 182.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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179,924 + GFF4810 0.69 -1.4
180,128 + GFF4810 0.78 +0.8
180,128 + GFF4810 0.78 -1.6
180,129 - GFF4810 0.78 +0.3
180,129 - GFF4810 0.78 -0.7
180,152 + GFF4810 0.79 -0.2
180,152 + GFF4810 0.79 +0.0
180,153 - GFF4810 0.79 +0.0
180,153 - GFF4810 0.79 -0.3
180,153 - GFF4810 0.79 -0.4
180,153 - GFF4810 0.79 -0.2
180,162 - GFF4810 0.80 -0.2
180,162 - GFF4810 0.80 +0.1
180,162 - GFF4810 0.80 -0.4
180,162 - GFF4810 0.80 -0.4
180,186 - GFF4810 0.81 +0.4
180,239 + GFF4810 0.83 -1.2
180,240 - GFF4810 0.83 -0.1
180,263 + GFF4810 0.84 +0.1
180,264 - GFF4810 0.84 +0.6
180,264 - GFF4810 0.84 +0.2
180,264 - GFF4810 0.84 +0.1
180,264 - GFF4810 0.84 +0.2
180,264 - GFF4810 0.84 -0.4
180,264 - GFF4810 0.84 +0.3
180,854 - +0.2
180,854 - -0.3
181,042 + GFF4811 0.16 +1.1
181,043 - GFF4811 0.16 -0.4
181,075 + GFF4811 0.19 -0.4
181,075 + GFF4811 0.19 -0.9
181,091 - GFF4811 0.21 +0.1
181,091 - GFF4811 0.21 +0.6
181,091 - GFF4811 0.21 -0.3
181,091 - GFF4811 0.21 +0.1
181,330 + GFF4811 0.42 -0.6
181,330 + GFF4811 0.42 +1.0
181,331 - GFF4811 0.42 +0.4
181,331 - GFF4811 0.42 -0.9
181,331 - GFF4811 0.42 -0.5
181,451 - GFF4811 0.53 +2.6
181,499 - GFF4811 0.58 -0.3
181,550 - GFF4811 0.63 +0.4
181,550 - GFF4811 0.63 +0.8
181,621 + GFF4811 0.69 -0.1
181,622 - GFF4811 0.69 +0.8
181,723 + GFF4811 0.78 -0.7
181,723 + GFF4811 0.78 +1.6
181,724 - GFF4811 0.78 +0.3
182,076 + +0.4
182,198 - -0.9
182,376 + -0.4
182,423 - -0.8
182,432 - +0.5
182,432 - +0.1
182,434 - -0.4
182,824 + +0.1
182,824 + -0.6
182,824 + +0.2
182,825 - -0.3
182,825 - -1.4
182,825 - +0.1
182,825 - -0.1
182,825 - -0.0
182,872 - -0.3
182,878 + +0.2
182,878 + -0.2
182,879 - -0.0
182,885 + -0.4
182,886 - +0.3
182,886 - -1.4
182,953 - +1.1
182,953 - -0.3
182,953 - +0.6

Or see this region's nucleotide sequence