Strain Fitness in Variovorax sp. SCN45 around GFF4785

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4784 and GFF4785 are separated by 18 nucleotidesGFF4785 and GFF4786 are separated by 81 nucleotides GFF4784 - no description, at 153,251 to 154,306 GFF4784 GFF4785 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 154,325 to 156,934 GFF4785 GFF4786 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 157,016 to 158,479 GFF4786 Position (kb) 154 155 156 157Strain fitness (log2 ratio) -1 0 1 2at 153.410 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.485 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.582 kb on - strand, within GFF4784at 153.582 kb on - strand, within GFF4784at 153.655 kb on + strand, within GFF4784at 153.665 kb on + strand, within GFF4784at 153.666 kb on - strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.679 kb on + strand, within GFF4784at 153.681 kb on + strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.803 kb on + strand, within GFF4784at 153.804 kb on - strand, within GFF4784at 153.997 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.011 kb on - strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.065 kb on - strand, within GFF4784at 154.144 kb on + strand, within GFF4784at 154.145 kb on - strand, within GFF4784at 154.185 kb on + strand, within GFF4784at 154.327 kb on - strandat 154.327 kb on - strandat 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.717 kb on - strand, within GFF4785at 154.717 kb on - strand, within GFF4785at 154.962 kb on + strand, within GFF4785at 154.962 kb on + strand, within GFF4785at 154.962 kb on + strand, within GFF4785at 154.963 kb on - strand, within GFF4785at 155.073 kb on + strand, within GFF4785at 155.074 kb on - strand, within GFF4785at 155.074 kb on - strand, within GFF4785at 155.100 kb on + strand, within GFF4785at 155.100 kb on + strand, within GFF4785at 155.101 kb on - strand, within GFF4785at 155.101 kb on - strand, within GFF4785at 155.101 kb on - strand, within GFF4785at 155.367 kb on + strand, within GFF4785at 155.367 kb on + strand, within GFF4785at 155.367 kb on + strand, within GFF4785at 155.367 kb on + strand, within GFF4785at 155.368 kb on - strand, within GFF4785at 155.368 kb on - strand, within GFF4785at 155.368 kb on - strand, within GFF4785at 155.368 kb on - strand, within GFF4785at 155.368 kb on - strand, within GFF4785at 155.368 kb on - strand, within GFF4785at 155.561 kb on + strand, within GFF4785at 155.562 kb on - strand, within GFF4785at 155.562 kb on - strand, within GFF4785at 155.562 kb on - strand, within GFF4785at 155.562 kb on - strand, within GFF4785at 155.562 kb on - strand, within GFF4785at 155.562 kb on - strand, within GFF4785at 155.562 kb on - strand, within GFF4785at 155.571 kb on + strand, within GFF4785at 155.572 kb on - strand, within GFF4785at 155.637 kb on + strand, within GFF4785at 155.637 kb on + strand, within GFF4785at 155.638 kb on - strand, within GFF4785at 155.638 kb on - strand, within GFF4785at 155.638 kb on - strand, within GFF4785at 155.638 kb on - strand, within GFF4785at 155.842 kb on - strand, within GFF4785at 155.895 kb on + strand, within GFF4785at 155.895 kb on + strand, within GFF4785at 156.963 kb on + strandat 156.963 kb on + strandat 156.964 kb on - strandat 157.073 kb on - strandat 157.073 kb on - strandat 157.259 kb on + strand, within GFF4786at 157.259 kb on + strand, within GFF4786at 157.259 kb on + strand, within GFF4786at 157.260 kb on - strand, within GFF4786at 157.260 kb on - strand, within GFF4786at 157.260 kb on - strand, within GFF4786at 157.260 kb on - strand, within GFF4786at 157.260 kb on - strand, within GFF4786at 157.635 kb on - strand, within GFF4786at 157.635 kb on - strand, within GFF4786at 157.635 kb on - strand, within GFF4786at 157.682 kb on + strand, within GFF4786at 157.832 kb on + strand, within GFF4786at 157.833 kb on - strand, within GFF4786at 157.833 kb on - strand, within GFF4786at 157.833 kb on - strand, within GFF4786

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
153,410 + GFF4784 0.15 +0.4
153,468 + GFF4784 0.21 -0.8
153,468 + GFF4784 0.21 -0.2
153,468 + GFF4784 0.21 +0.1
153,469 - GFF4784 0.21 -0.8
153,469 - GFF4784 0.21 +0.4
153,469 - GFF4784 0.21 -0.1
153,485 + GFF4784 0.22 -0.8
153,581 + GFF4784 0.31 -0.7
153,581 + GFF4784 0.31 +0.0
153,581 + GFF4784 0.31 -0.0
153,581 + GFF4784 0.31 -0.6
153,582 - GFF4784 0.31 -1.0
153,582 - GFF4784 0.31 +0.1
153,655 + GFF4784 0.38 +0.7
153,665 + GFF4784 0.39 +0.2
153,666 - GFF4784 0.39 -0.0
153,674 + GFF4784 0.40 +0.6
153,674 + GFF4784 0.40 +0.1
153,674 + GFF4784 0.40 -0.1
153,674 + GFF4784 0.40 -0.5
153,674 + GFF4784 0.40 +0.2
153,674 + GFF4784 0.40 -0.2
153,674 + GFF4784 0.40 +1.4
153,674 + GFF4784 0.40 -1.0
153,674 + GFF4784 0.40 +0.8
153,674 + GFF4784 0.40 -0.2
153,674 + GFF4784 0.40 +0.1
153,674 + GFF4784 0.40 +0.9
153,674 + GFF4784 0.40 +0.8
153,674 + GFF4784 0.40 +1.0
153,674 + GFF4784 0.40 -0.4
153,674 + GFF4784 0.40 -0.1
153,674 + GFF4784 0.40 -0.3
153,674 + GFF4784 0.40 -0.7
153,674 + GFF4784 0.40 -0.7
153,675 - GFF4784 0.40 -0.9
153,675 - GFF4784 0.40 -0.3
153,675 - GFF4784 0.40 -0.8
153,675 - GFF4784 0.40 +0.6
153,675 - GFF4784 0.40 +0.7
153,675 - GFF4784 0.40 -0.0
153,675 - GFF4784 0.40 -0.0
153,675 - GFF4784 0.40 +0.8
153,675 - GFF4784 0.40 -0.3
153,675 - GFF4784 0.40 -0.6
153,675 - GFF4784 0.40 +0.0
153,675 - GFF4784 0.40 +0.6
153,675 - GFF4784 0.40 +0.4
153,675 - GFF4784 0.40 -0.9
153,675 - GFF4784 0.40 +0.2
153,675 - GFF4784 0.40 +0.1
153,675 - GFF4784 0.40 -0.5
153,675 - GFF4784 0.40 -0.3
153,675 - GFF4784 0.40 -0.2
153,679 + GFF4784 0.41 -0.1
153,681 + GFF4784 0.41 +0.1
153,682 - GFF4784 0.41 -0.8
153,682 - GFF4784 0.41 +0.0
153,682 - GFF4784 0.41 +0.9
153,682 - GFF4784 0.41 -0.6
153,682 - GFF4784 0.41 +0.2
153,722 - GFF4784 0.45 +0.3
153,722 - GFF4784 0.45 -0.3
153,722 - GFF4784 0.45 +0.2
153,803 + GFF4784 0.52 -0.5
153,804 - GFF4784 0.52 -0.2
153,997 + GFF4784 0.71 +1.4
154,010 + GFF4784 0.72 +1.8
154,010 + GFF4784 0.72 -0.5
154,010 + GFF4784 0.72 -0.8
154,010 + GFF4784 0.72 +0.1
154,010 + GFF4784 0.72 -0.5
154,010 + GFF4784 0.72 -1.5
154,011 - GFF4784 0.72 -0.3
154,064 + GFF4784 0.77 +0.3
154,064 + GFF4784 0.77 -0.9
154,064 + GFF4784 0.77 -1.4
154,065 - GFF4784 0.77 +0.0
154,144 + GFF4784 0.85 -0.0
154,145 - GFF4784 0.85 +0.1
154,185 + GFF4784 0.88 +0.2
154,327 - -0.2
154,327 - -1.6
154,716 + GFF4785 0.15 -0.0
154,716 + GFF4785 0.15 +0.2
154,716 + GFF4785 0.15 +0.8
154,716 + GFF4785 0.15 +0.5
154,716 + GFF4785 0.15 -0.7
154,716 + GFF4785 0.15 -0.3
154,716 + GFF4785 0.15 -0.3
154,717 - GFF4785 0.15 -0.4
154,717 - GFF4785 0.15 -0.0
154,962 + GFF4785 0.24 -0.2
154,962 + GFF4785 0.24 -1.6
154,962 + GFF4785 0.24 -0.4
154,963 - GFF4785 0.24 -0.8
155,073 + GFF4785 0.29 -0.2
155,074 - GFF4785 0.29 -1.0
155,074 - GFF4785 0.29 -1.4
155,100 + GFF4785 0.30 -0.5
155,100 + GFF4785 0.30 -0.2
155,101 - GFF4785 0.30 -0.7
155,101 - GFF4785 0.30 -0.5
155,101 - GFF4785 0.30 +0.2
155,367 + GFF4785 0.40 +0.8
155,367 + GFF4785 0.40 -0.2
155,367 + GFF4785 0.40 +0.6
155,367 + GFF4785 0.40 +0.4
155,368 - GFF4785 0.40 +0.9
155,368 - GFF4785 0.40 -1.4
155,368 - GFF4785 0.40 -0.6
155,368 - GFF4785 0.40 +0.1
155,368 - GFF4785 0.40 -0.8
155,368 - GFF4785 0.40 -0.2
155,561 + GFF4785 0.47 -1.0
155,562 - GFF4785 0.47 -0.3
155,562 - GFF4785 0.47 +0.4
155,562 - GFF4785 0.47 -0.0
155,562 - GFF4785 0.47 -0.3
155,562 - GFF4785 0.47 +0.5
155,562 - GFF4785 0.47 -1.0
155,562 - GFF4785 0.47 -0.2
155,571 + GFF4785 0.48 -0.7
155,572 - GFF4785 0.48 -0.7
155,637 + GFF4785 0.50 -0.5
155,637 + GFF4785 0.50 -1.3
155,638 - GFF4785 0.50 -0.6
155,638 - GFF4785 0.50 -1.4
155,638 - GFF4785 0.50 -0.6
155,638 - GFF4785 0.50 -0.4
155,842 - GFF4785 0.58 -0.2
155,895 + GFF4785 0.60 -0.8
155,895 + GFF4785 0.60 -0.5
156,963 + -1.4
156,963 + -1.5
156,964 - -1.3
157,073 - +1.4
157,073 - -0.3
157,259 + GFF4786 0.17 -0.2
157,259 + GFF4786 0.17 -0.2
157,259 + GFF4786 0.17 +1.0
157,260 - GFF4786 0.17 +0.1
157,260 - GFF4786 0.17 +0.4
157,260 - GFF4786 0.17 -0.8
157,260 - GFF4786 0.17 -0.3
157,260 - GFF4786 0.17 -0.1
157,635 - GFF4786 0.42 -0.1
157,635 - GFF4786 0.42 +0.0
157,635 - GFF4786 0.42 +0.0
157,682 + GFF4786 0.45 +1.0
157,832 + GFF4786 0.56 +0.1
157,833 - GFF4786 0.56 +0.4
157,833 - GFF4786 0.56 -0.0
157,833 - GFF4786 0.56 +0.1

Or see this region's nucleotide sequence