Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4681 and GFF4682 are separated by 28 nucleotides GFF4682 and GFF4683 are separated by 69 nucleotides GFF4683 and GFF4684 are separated by 86 nucleotides
GFF4681 - Serine acetyltransferase (EC 2.3.1.30), at 40,358 to 41,131
GFF4681
GFF4682 - Transcriptional regulator, MerR family, at 41,160 to 41,630
GFF4682
GFF4683 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 41,700 to 44,015
GFF4683
GFF4684 - Na+/H+ antiporter, at 44,102 to 45,355
GFF4684
Position (kb) 41
42
43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.129 kb on + strand at 41.130 kb on - strand at 41.130 kb on - strand at 41.130 kb on - strand at 41.130 kb on - strand at 41.130 kb on - strand at 41.130 kb on - strand at 41.130 kb on - strand at 41.509 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.516 kb on - strand, within GFF4682 at 41.524 kb on + strand, within GFF4682 at 41.524 kb on + strand, within GFF4682 at 41.524 kb on + strand, within GFF4682 at 41.524 kb on + strand, within GFF4682 at 41.524 kb on + strand, within GFF4682 at 41.524 kb on + strand, within GFF4682 at 41.525 kb on - strand, within GFF4682 at 41.525 kb on - strand, within GFF4682 at 41.572 kb on + strand, within GFF4682 at 41.572 kb on + strand, within GFF4682 at 41.572 kb on + strand, within GFF4682 at 41.572 kb on + strand, within GFF4682 at 41.572 kb on + strand, within GFF4682 at 41.573 kb on - strand, within GFF4682 at 41.573 kb on - strand, within GFF4682 at 41.573 kb on - strand, within GFF4682 at 41.573 kb on - strand, within GFF4682 at 41.573 kb on - strand, within GFF4682 at 41.573 kb on - strand, within GFF4682 at 41.573 kb on - strand, within GFF4682 at 41.576 kb on - strand, within GFF4682 at 41.670 kb on + strand at 41.670 kb on + strand at 41.670 kb on + strand at 41.670 kb on + strand at 41.671 kb on - strand at 41.671 kb on - strand at 42.297 kb on + strand, within GFF4683 at 42.297 kb on + strand, within GFF4683 at 42.297 kb on + strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.298 kb on - strand, within GFF4683 at 42.420 kb on + strand, within GFF4683 at 42.420 kb on + strand, within GFF4683 at 42.420 kb on + strand, within GFF4683 at 42.421 kb on - strand, within GFF4683 at 42.421 kb on - strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.855 kb on + strand, within GFF4683 at 42.856 kb on - strand, within GFF4683 at 42.856 kb on - strand, within GFF4683 at 42.856 kb on - strand, within GFF4683 at 42.856 kb on - strand, within GFF4683 at 42.856 kb on - strand, within GFF4683 at 42.856 kb on - strand, within GFF4683 at 42.856 kb on - strand, within GFF4683 at 42.939 kb on + strand, within GFF4683 at 42.939 kb on + strand, within GFF4683 at 42.940 kb on - strand, within GFF4683 at 42.940 kb on - strand, within GFF4683 at 43.062 kb on + strand, within GFF4683 at 43.062 kb on + strand, within GFF4683 at 43.062 kb on + strand, within GFF4683 at 43.062 kb on + strand, within GFF4683 at 43.063 kb on - strand, within GFF4683 at 43.063 kb on - strand, within GFF4683 at 43.063 kb on - strand, within GFF4683 at 43.332 kb on + strand, within GFF4683 at 43.332 kb on + strand, within GFF4683 at 43.332 kb on + strand, within GFF4683 at 43.332 kb on + strand, within GFF4683 at 43.332 kb on + strand, within GFF4683 at 43.332 kb on + strand, within GFF4683 at 43.332 kb on + strand, within GFF4683 at 43.332 kb on + strand, within GFF4683 at 43.333 kb on - strand, within GFF4683 at 43.333 kb on - strand, within GFF4683 at 43.333 kb on - strand, within GFF4683 at 43.333 kb on - strand, within GFF4683 at 43.333 kb on - strand, within GFF4683 at 43.333 kb on - strand, within GFF4683 at 43.669 kb on - strand, within GFF4683 at 43.669 kb on - strand, within GFF4683 at 44.057 kb on + strand at 44.057 kb on + strand at 44.057 kb on + strand at 44.057 kb on + strand at 44.057 kb on + strand at 44.058 kb on - strand at 44.089 kb on + strand at 44.089 kb on + strand at 44.090 kb on - strand at 44.090 kb on - strand at 44.090 kb on - strand at 44.090 kb on - strand at 44.090 kb on - strand at 44.090 kb on - strand at 44.097 kb on - strand at 44.402 kb on + strand, within GFF4684 at 44.403 kb on - strand, within GFF4684 at 44.403 kb on - strand, within GFF4684 at 44.465 kb on + strand, within GFF4684
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 41,129 + -0.6 41,130 - -0.8 41,130 - -0.5 41,130 - +0.1 41,130 - +0.1 41,130 - +0.1 41,130 - +1.4 41,130 - -0.0 41,509 - GFF4682 0.74 -0.0 41,516 - GFF4682 0.76 -0.3 41,516 - GFF4682 0.76 +0.2 41,516 - GFF4682 0.76 -0.1 41,516 - GFF4682 0.76 -0.2 41,516 - GFF4682 0.76 +0.4 41,516 - GFF4682 0.76 -0.5 41,516 - GFF4682 0.76 +0.4 41,516 - GFF4682 0.76 +1.1 41,516 - GFF4682 0.76 +2.4 41,524 + GFF4682 0.77 -0.2 41,524 + GFF4682 0.77 +0.2 41,524 + GFF4682 0.77 -0.4 41,524 + GFF4682 0.77 -0.2 41,524 + GFF4682 0.77 -0.1 41,524 + GFF4682 0.77 -0.8 41,525 - GFF4682 0.77 -0.3 41,525 - GFF4682 0.77 -0.1 41,572 + GFF4682 0.87 -0.3 41,572 + GFF4682 0.87 -0.3 41,572 + GFF4682 0.87 -0.5 41,572 + GFF4682 0.87 -0.7 41,572 + GFF4682 0.87 -0.9 41,573 - GFF4682 0.88 -0.0 41,573 - GFF4682 0.88 -0.2 41,573 - GFF4682 0.88 -0.6 41,573 - GFF4682 0.88 -0.7 41,573 - GFF4682 0.88 +1.4 41,573 - GFF4682 0.88 -1.1 41,573 - GFF4682 0.88 +0.9 41,576 - GFF4682 0.88 -0.2 41,670 + -1.7 41,670 + +0.2 41,670 + +1.0 41,670 + +0.6 41,671 - +0.0 41,671 - -0.3 42,297 + GFF4683 0.26 -1.3 42,297 + GFF4683 0.26 -0.0 42,297 + GFF4683 0.26 +1.2 42,298 - GFF4683 0.26 +0.0 42,298 - GFF4683 0.26 -0.6 42,298 - GFF4683 0.26 -0.9 42,298 - GFF4683 0.26 -0.0 42,298 - GFF4683 0.26 -0.6 42,298 - GFF4683 0.26 -1.1 42,298 - GFF4683 0.26 -0.4 42,298 - GFF4683 0.26 -1.2 42,298 - GFF4683 0.26 -0.1 42,298 - GFF4683 0.26 -0.2 42,298 - GFF4683 0.26 -0.5 42,420 + GFF4683 0.31 +0.1 42,420 + GFF4683 0.31 -0.3 42,420 + GFF4683 0.31 +0.7 42,421 - GFF4683 0.31 +0.0 42,421 - GFF4683 0.31 +0.4 42,855 + GFF4683 0.50 -0.6 42,855 + GFF4683 0.50 -0.4 42,855 + GFF4683 0.50 -1.4 42,855 + GFF4683 0.50 +0.3 42,855 + GFF4683 0.50 -0.2 42,855 + GFF4683 0.50 +0.2 42,855 + GFF4683 0.50 +0.6 42,855 + GFF4683 0.50 -0.1 42,855 + GFF4683 0.50 -1.2 42,855 + GFF4683 0.50 -0.0 42,856 - GFF4683 0.50 +0.4 42,856 - GFF4683 0.50 -1.4 42,856 - GFF4683 0.50 +0.5 42,856 - GFF4683 0.50 +0.8 42,856 - GFF4683 0.50 -0.4 42,856 - GFF4683 0.50 -0.1 42,856 - GFF4683 0.50 +0.3 42,939 + GFF4683 0.53 +0.2 42,939 + GFF4683 0.53 +0.1 42,940 - GFF4683 0.54 -0.3 42,940 - GFF4683 0.54 +0.2 43,062 + GFF4683 0.59 +0.6 43,062 + GFF4683 0.59 +2.0 43,062 + GFF4683 0.59 -0.4 43,062 + GFF4683 0.59 -0.2 43,063 - GFF4683 0.59 +0.1 43,063 - GFF4683 0.59 -0.2 43,063 - GFF4683 0.59 -0.1 43,332 + GFF4683 0.70 -0.7 43,332 + GFF4683 0.70 -0.2 43,332 + GFF4683 0.70 +0.1 43,332 + GFF4683 0.70 -0.9 43,332 + GFF4683 0.70 -0.3 43,332 + GFF4683 0.70 -1.1 43,332 + GFF4683 0.70 -0.1 43,332 + GFF4683 0.70 -0.1 43,333 - GFF4683 0.71 +0.0 43,333 - GFF4683 0.71 -1.0 43,333 - GFF4683 0.71 +1.4 43,333 - GFF4683 0.71 -0.1 43,333 - GFF4683 0.71 +0.3 43,333 - GFF4683 0.71 -0.4 43,669 - GFF4683 0.85 -0.3 43,669 - GFF4683 0.85 +0.0 44,057 + +0.0 44,057 + +0.1 44,057 + -0.4 44,057 + -0.8 44,057 + +0.5 44,058 - +0.8 44,089 + -0.5 44,089 + -1.4 44,090 - -0.8 44,090 - +0.3 44,090 - +0.4 44,090 - -0.5 44,090 - -0.7 44,090 - -2.1 44,097 - -0.6 44,402 + GFF4684 0.24 -1.1 44,403 - GFF4684 0.24 +0.1 44,403 - GFF4684 0.24 -0.7 44,465 + GFF4684 0.29 -0.4
Or see this region's nucleotide sequence