Strain Fitness in Variovorax sp. SCN45 around GFF4596

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4595 and GFF4596 are separated by 61 nucleotidesGFF4596 and GFF4597 are separated by 110 nucleotides GFF4595 - Transcriptional regulator, at 236,174 to 237,160 GFF4595 GFF4596 - Amidase family protein BDAG_03520, at 237,222 to 238,664 GFF4596 GFF4597 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 238,775 to 239,713 GFF4597 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 236.316 kb on + strand, within GFF4595at 236.316 kb on + strand, within GFF4595at 236.317 kb on - strand, within GFF4595at 236.481 kb on + strand, within GFF4595at 236.481 kb on + strand, within GFF4595at 236.547 kb on + strand, within GFF4595at 236.548 kb on - strand, within GFF4595at 236.562 kb on + strand, within GFF4595at 236.562 kb on + strand, within GFF4595at 236.563 kb on - strand, within GFF4595at 236.571 kb on + strand, within GFF4595at 236.571 kb on + strand, within GFF4595at 236.572 kb on - strand, within GFF4595at 236.572 kb on - strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.680 kb on - strand, within GFF4595at 236.680 kb on - strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.722 kb on - strand, within GFF4595at 236.967 kb on + strand, within GFF4595at 237.080 kb on + strandat 237.080 kb on + strandat 237.080 kb on + strandat 237.080 kb on + strandat 237.080 kb on + strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.143 kb on + strandat 237.143 kb on + strandat 237.143 kb on + strandat 237.143 kb on + strandat 237.143 kb on + strandat 237.144 kb on - strandat 237.144 kb on - strandat 237.144 kb on - strandat 237.151 kb on + strandat 237.151 kb on + strandat 237.151 kb on + strandat 237.151 kb on + strandat 237.151 kb on + strandat 237.152 kb on - strandat 237.152 kb on - strandat 237.152 kb on - strandat 237.152 kb on - strandat 237.152 kb on - strandat 237.171 kb on + strandat 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.666 kb on + strand, within GFF4596at 237.667 kb on - strand, within GFF4596at 237.712 kb on + strand, within GFF4596at 238.215 kb on + strand, within GFF4596at 238.320 kb on + strand, within GFF4596at 238.335 kb on + strand, within GFF4596at 238.335 kb on + strand, within GFF4596at 238.336 kb on - strand, within GFF4596at 238.336 kb on - strand, within GFF4596at 238.336 kb on - strand, within GFF4596at 238.436 kb on - strand, within GFF4596at 238.458 kb on + strand, within GFF4596at 238.458 kb on + strand, within GFF4596at 238.458 kb on + strand, within GFF4596at 238.458 kb on + strand, within GFF4596at 238.459 kb on - strand, within GFF4596at 238.459 kb on - strand, within GFF4596at 238.459 kb on - strand, within GFF4596at 238.459 kb on - strand, within GFF4596at 238.459 kb on - strand, within GFF4596at 238.459 kb on - strand, within GFF4596at 238.459 kb on - strand, within GFF4596at 238.588 kb on + strandat 238.614 kb on + strandat 238.614 kb on + strandat 238.614 kb on + strandat 238.614 kb on + strandat 238.614 kb on + strandat 238.614 kb on + strandat 238.614 kb on + strandat 238.614 kb on + strandat 238.614 kb on + strandat 238.615 kb on - strandat 238.615 kb on - strandat 238.615 kb on - strandat 238.615 kb on - strandat 238.615 kb on - strandat 238.941 kb on + strand, within GFF4597at 238.942 kb on - strand, within GFF4597at 238.942 kb on - strand, within GFF4597at 239.037 kb on + strand, within GFF4597at 239.038 kb on - strand, within GFF4597at 239.160 kb on + strand, within GFF4597at 239.161 kb on - strand, within GFF4597at 239.161 kb on - strand, within GFF4597at 239.161 kb on - strand, within GFF4597at 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.629 kb on - strandat 239.629 kb on - strandat 239.629 kb on - strandat 239.640 kb on + strandat 239.640 kb on + strandat 239.640 kb on + strandat 239.641 kb on - strandat 239.641 kb on - strandat 239.641 kb on - strandat 239.641 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
236,316 + GFF4595 0.14 +0.0
236,316 + GFF4595 0.14 -2.2
236,317 - GFF4595 0.14 -0.2
236,481 + GFF4595 0.31 -0.6
236,481 + GFF4595 0.31 -0.7
236,547 + GFF4595 0.38 -0.9
236,548 - GFF4595 0.38 +0.3
236,562 + GFF4595 0.39 +0.6
236,562 + GFF4595 0.39 +0.3
236,563 - GFF4595 0.39 -0.4
236,571 + GFF4595 0.40 +1.6
236,571 + GFF4595 0.40 +1.9
236,572 - GFF4595 0.40 -1.4
236,572 - GFF4595 0.40 -0.3
236,679 + GFF4595 0.51 -0.8
236,679 + GFF4595 0.51 +0.3
236,679 + GFF4595 0.51 +0.2
236,679 + GFF4595 0.51 -0.1
236,679 + GFF4595 0.51 +0.5
236,680 - GFF4595 0.51 -0.1
236,680 - GFF4595 0.51 +0.9
236,721 + GFF4595 0.55 +0.1
236,721 + GFF4595 0.55 +0.1
236,721 + GFF4595 0.55 +0.4
236,722 - GFF4595 0.56 -0.2
236,967 + GFF4595 0.80 -1.2
237,080 + -0.8
237,080 + +0.2
237,080 + -1.7
237,080 + +0.6
237,080 + +0.3
237,081 - +1.6
237,081 - -0.9
237,081 - +0.8
237,081 - +1.2
237,081 - +0.3
237,081 - -0.4
237,143 + +0.1
237,143 + +0.6
237,143 + -0.4
237,143 + -0.1
237,143 + +0.2
237,144 - +0.6
237,144 - +0.2
237,144 - -2.2
237,151 + +0.0
237,151 + +1.1
237,151 + +0.6
237,151 + -0.2
237,151 + -0.1
237,152 - +0.6
237,152 - -0.3
237,152 - +0.2
237,152 - +0.1
237,152 - -0.4
237,171 + +0.9
237,633 + GFF4596 0.28 -1.1
237,633 + GFF4596 0.28 -0.8
237,633 + GFF4596 0.28 -0.2
237,633 + GFF4596 0.28 +0.6
237,633 + GFF4596 0.28 -0.7
237,633 + GFF4596 0.28 -0.3
237,633 + GFF4596 0.28 -1.1
237,633 + GFF4596 0.28 +0.3
237,633 + GFF4596 0.28 -0.8
237,633 + GFF4596 0.28 -0.4
237,633 + GFF4596 0.28 -0.7
237,633 + GFF4596 0.28 -0.1
237,633 + GFF4596 0.28 -0.1
237,634 - GFF4596 0.29 -0.7
237,634 - GFF4596 0.29 -2.4
237,634 - GFF4596 0.29 -1.2
237,634 - GFF4596 0.29 +1.6
237,634 - GFF4596 0.29 -0.1
237,634 - GFF4596 0.29 -0.7
237,634 - GFF4596 0.29 -0.9
237,634 - GFF4596 0.29 -0.8
237,634 - GFF4596 0.29 +0.1
237,634 - GFF4596 0.29 +1.3
237,634 - GFF4596 0.29 +0.1
237,666 + GFF4596 0.31 -0.8
237,667 - GFF4596 0.31 +0.6
237,712 + GFF4596 0.34 -0.4
238,215 + GFF4596 0.69 -0.4
238,320 + GFF4596 0.76 +0.8
238,335 + GFF4596 0.77 -0.5
238,335 + GFF4596 0.77 +0.3
238,336 - GFF4596 0.77 -0.1
238,336 - GFF4596 0.77 -1.0
238,336 - GFF4596 0.77 -0.2
238,436 - GFF4596 0.84 -0.5
238,458 + GFF4596 0.86 +0.0
238,458 + GFF4596 0.86 -1.8
238,458 + GFF4596 0.86 -0.4
238,458 + GFF4596 0.86 +0.4
238,459 - GFF4596 0.86 -2.2
238,459 - GFF4596 0.86 +0.8
238,459 - GFF4596 0.86 +0.4
238,459 - GFF4596 0.86 -0.4
238,459 - GFF4596 0.86 +0.2
238,459 - GFF4596 0.86 -0.7
238,459 - GFF4596 0.86 -0.3
238,588 + +0.0
238,614 + -0.2
238,614 + -0.5
238,614 + -1.2
238,614 + -0.7
238,614 + -0.4
238,614 + -0.7
238,614 + +0.3
238,614 + -0.6
238,614 + +0.6
238,615 - +0.0
238,615 - -1.3
238,615 - -0.2
238,615 - -0.8
238,615 - +0.2
238,941 + GFF4597 0.18 +0.3
238,942 - GFF4597 0.18 -1.0
238,942 - GFF4597 0.18 +0.1
239,037 + GFF4597 0.28 -0.8
239,038 - GFF4597 0.28 -0.3
239,160 + GFF4597 0.41 +0.5
239,161 - GFF4597 0.41 -0.7
239,161 - GFF4597 0.41 +0.5
239,161 - GFF4597 0.41 -1.1
239,628 + -0.5
239,628 + -0.9
239,628 + +0.6
239,628 + -0.3
239,628 + +0.8
239,628 + -0.2
239,628 + -0.7
239,629 - +0.3
239,629 - -0.1
239,629 - +0.9
239,640 + +1.2
239,640 + +0.2
239,640 + -0.0
239,641 - -0.8
239,641 - +0.3
239,641 - -0.6
239,641 - +0.1

Or see this region's nucleotide sequence