Strain Fitness in Variovorax sp. SCN45 around GFF4589

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4588 and GFF4589 are separated by 105 nucleotidesGFF4589 and GFF4590 are separated by 53 nucleotidesGFF4590 and GFF4591 are separated by 27 nucleotides GFF4588 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 228,980 to 229,957 GFF4588 GFF4589 - no description, at 230,063 to 231,118 GFF4589 GFF4590 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 231,172 to 231,921 GFF4590 GFF4591 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 231,949 to 232,617 GFF4591 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1at 229.209 kb on - strand, within GFF4588at 229.247 kb on + strand, within GFF4588at 229.295 kb on + strand, within GFF4588at 229.295 kb on + strand, within GFF4588at 229.296 kb on - strand, within GFF4588at 229.337 kb on + strand, within GFF4588at 229.691 kb on + strand, within GFF4588at 229.692 kb on - strand, within GFF4588at 229.692 kb on - strand, within GFF4588at 229.715 kb on + strand, within GFF4588at 229.715 kb on + strand, within GFF4588at 229.715 kb on + strand, within GFF4588at 229.716 kb on - strand, within GFF4588at 229.716 kb on - strand, within GFF4588at 229.748 kb on - strand, within GFF4588at 229.760 kb on + strand, within GFF4588at 229.761 kb on - strand, within GFF4588at 229.761 kb on - strand, within GFF4588at 229.761 kb on - strand, within GFF4588at 229.761 kb on - strand, within GFF4588at 229.761 kb on - strand, within GFF4588at 229.761 kb on - strand, within GFF4588at 230.204 kb on + strand, within GFF4589at 230.204 kb on + strand, within GFF4589at 230.205 kb on - strand, within GFF4589at 230.205 kb on - strand, within GFF4589at 230.207 kb on + strand, within GFF4589at 230.234 kb on - strand, within GFF4589at 230.379 kb on - strand, within GFF4589at 230.379 kb on - strand, within GFF4589at 230.453 kb on + strand, within GFF4589at 230.453 kb on + strand, within GFF4589at 230.454 kb on - strand, within GFF4589at 230.454 kb on - strand, within GFF4589at 230.586 kb on - strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.859 kb on - strand, within GFF4589at 230.859 kb on - strand, within GFF4589at 230.859 kb on - strand, within GFF4589at 230.859 kb on - strand, within GFF4589at 231.057 kb on + strandat 231.878 kb on + strandat 231.879 kb on - strandat 231.889 kb on + strandat 231.889 kb on + strandat 231.889 kb on + strandat 231.889 kb on + strandat 231.889 kb on + strandat 231.890 kb on - strandat 232.004 kb on + strandat 232.004 kb on + strandat 232.005 kb on - strandat 232.019 kb on + strand, within GFF4591at 232.020 kb on - strand, within GFF4591at 232.040 kb on + strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.115 kb on + strand, within GFF4591at 232.116 kb on - strand, within GFF4591at 232.116 kb on - strand, within GFF4591at 232.116 kb on - strand, within GFF4591at 232.116 kb on - strand, within GFF4591

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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229,209 - GFF4588 0.23 -0.5
229,247 + GFF4588 0.27 +1.2
229,295 + GFF4588 0.32 +0.1
229,295 + GFF4588 0.32 +0.3
229,296 - GFF4588 0.32 -0.1
229,337 + GFF4588 0.37 -0.3
229,691 + GFF4588 0.73 -0.4
229,692 - GFF4588 0.73 -2.2
229,692 - GFF4588 0.73 -0.1
229,715 + GFF4588 0.75 +0.2
229,715 + GFF4588 0.75 +0.1
229,715 + GFF4588 0.75 -0.3
229,716 - GFF4588 0.75 -0.3
229,716 - GFF4588 0.75 -0.2
229,748 - GFF4588 0.79 -1.2
229,760 + GFF4588 0.80 -1.2
229,761 - GFF4588 0.80 -0.3
229,761 - GFF4588 0.80 -0.3
229,761 - GFF4588 0.80 -1.4
229,761 - GFF4588 0.80 +0.9
229,761 - GFF4588 0.80 -0.6
229,761 - GFF4588 0.80 +0.0
230,204 + GFF4589 0.13 +1.2
230,204 + GFF4589 0.13 +0.2
230,205 - GFF4589 0.13 +0.1
230,205 - GFF4589 0.13 -0.2
230,207 + GFF4589 0.14 -0.0
230,234 - GFF4589 0.16 +0.6
230,379 - GFF4589 0.30 -0.9
230,379 - GFF4589 0.30 +1.5
230,453 + GFF4589 0.37 -0.4
230,453 + GFF4589 0.37 +0.7
230,454 - GFF4589 0.37 +1.6
230,454 - GFF4589 0.37 -1.8
230,586 - GFF4589 0.50 -0.5
230,858 + GFF4589 0.75 +0.3
230,858 + GFF4589 0.75 -0.7
230,858 + GFF4589 0.75 -0.1
230,858 + GFF4589 0.75 -1.2
230,858 + GFF4589 0.75 +0.2
230,858 + GFF4589 0.75 +1.1
230,858 + GFF4589 0.75 -0.1
230,858 + GFF4589 0.75 +0.4
230,859 - GFF4589 0.75 -0.4
230,859 - GFF4589 0.75 +0.8
230,859 - GFF4589 0.75 +0.2
230,859 - GFF4589 0.75 -0.7
231,057 + -0.5
231,878 + +0.0
231,879 - +0.8
231,889 + +0.3
231,889 + +1.1
231,889 + -2.0
231,889 + -0.4
231,889 + -0.4
231,890 - +0.3
232,004 + +0.8
232,004 + -0.1
232,005 - -0.5
232,019 + GFF4591 0.10 +1.1
232,020 - GFF4591 0.11 -0.6
232,040 + GFF4591 0.14 +0.3
232,041 - GFF4591 0.14 +0.2
232,041 - GFF4591 0.14 +0.1
232,041 - GFF4591 0.14 +0.6
232,041 - GFF4591 0.14 +1.1
232,041 - GFF4591 0.14 -0.3
232,115 + GFF4591 0.25 +0.2
232,116 - GFF4591 0.25 +0.6
232,116 - GFF4591 0.25 -0.7
232,116 - GFF4591 0.25 -0.9
232,116 - GFF4591 0.25 +1.6

Or see this region's nucleotide sequence