Strain Fitness in Variovorax sp. SCN45 around GFF4573

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4571 and GFF4572 overlap by 4 nucleotidesGFF4572 and GFF4573 are separated by 61 nucleotidesGFF4573 and GFF4574 are separated by 40 nucleotides GFF4571 - Acyl-CoA dehydrogenase family protein, at 209,108 to 210,250 GFF4571 GFF4572 - Enoyl-CoA hydratase (EC 4.2.1.17), at 210,247 to 211,074 GFF4572 GFF4573 - L-carnitine dehydratase/bile acid-inducible protein F, at 211,136 to 212,344 GFF4573 GFF4574 - BUG/TctC family periplasmic protein, at 212,385 to 213,377 GFF4574 Position (kb) 211 212 213Strain fitness (log2 ratio) -1 0 1at 210.155 kb on + strandat 210.155 kb on + strandat 210.218 kb on + strandat 210.218 kb on + strandat 210.218 kb on + strandat 210.219 kb on - strandat 210.219 kb on - strandat 210.219 kb on - strandat 210.219 kb on - strandat 210.352 kb on + strand, within GFF4572at 210.352 kb on + strand, within GFF4572at 210.353 kb on - strand, within GFF4572at 210.649 kb on + strand, within GFF4572at 210.649 kb on + strand, within GFF4572at 210.650 kb on - strand, within GFF4572at 210.650 kb on - strand, within GFF4572at 210.650 kb on - strand, within GFF4572at 210.650 kb on - strand, within GFF4572at 210.661 kb on + strand, within GFF4572at 210.662 kb on - strand, within GFF4572at 210.662 kb on - strand, within GFF4572at 210.662 kb on - strand, within GFF4572at 210.662 kb on - strand, within GFF4572at 211.326 kb on - strand, within GFF4573at 211.326 kb on - strand, within GFF4573at 211.475 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.512 kb on - strand, within GFF4573at 211.512 kb on - strand, within GFF4573at 211.566 kb on - strand, within GFF4573at 211.673 kb on + strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.703 kb on + strand, within GFF4573at 211.778 kb on + strand, within GFF4573at 211.779 kb on - strand, within GFF4573at 211.779 kb on - strand, within GFF4573at 211.781 kb on + strand, within GFF4573at 211.781 kb on + strand, within GFF4573at 211.781 kb on + strand, within GFF4573at 211.782 kb on - strand, within GFF4573at 212.661 kb on + strand, within GFF4574at 212.763 kb on + strand, within GFF4574at 212.763 kb on + strand, within GFF4574at 212.764 kb on - strand, within GFF4574at 212.764 kb on - strand, within GFF4574at 212.764 kb on - strand, within GFF4574at 212.764 kb on - strand, within GFF4574at 212.869 kb on - strand, within GFF4574at 212.869 kb on - strand, within GFF4574at 212.869 kb on - strand, within GFF4574at 212.869 kb on - strand, within GFF4574at 212.869 kb on - strand, within GFF4574at 213.268 kb on + strand, within GFF4574at 213.269 kb on - strand, within GFF4574

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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210,155 + -0.3
210,155 + -0.9
210,218 + -0.2
210,218 + -1.2
210,218 + -0.3
210,219 - -0.1
210,219 - +1.0
210,219 - +0.6
210,219 - -0.5
210,352 + GFF4572 0.13 -0.5
210,352 + GFF4572 0.13 -1.1
210,353 - GFF4572 0.13 -0.0
210,649 + GFF4572 0.49 +0.5
210,649 + GFF4572 0.49 -0.9
210,650 - GFF4572 0.49 -0.2
210,650 - GFF4572 0.49 -0.9
210,650 - GFF4572 0.49 +0.8
210,650 - GFF4572 0.49 +0.3
210,661 + GFF4572 0.50 -0.4
210,662 - GFF4572 0.50 -0.1
210,662 - GFF4572 0.50 +1.5
210,662 - GFF4572 0.50 -0.3
210,662 - GFF4572 0.50 +0.3
211,326 - GFF4573 0.16 -0.5
211,326 - GFF4573 0.16 -1.0
211,475 + GFF4573 0.28 -0.1
211,511 + GFF4573 0.31 +1.6
211,511 + GFF4573 0.31 +0.8
211,511 + GFF4573 0.31 -0.9
211,511 + GFF4573 0.31 -1.2
211,511 + GFF4573 0.31 -0.4
211,511 + GFF4573 0.31 -0.4
211,512 - GFF4573 0.31 -1.5
211,512 - GFF4573 0.31 -0.7
211,566 - GFF4573 0.36 -0.4
211,673 + GFF4573 0.44 -0.2
211,674 - GFF4573 0.44 -0.6
211,674 - GFF4573 0.44 -0.6
211,674 - GFF4573 0.44 -0.2
211,674 - GFF4573 0.44 -0.3
211,674 - GFF4573 0.44 -0.4
211,703 + GFF4573 0.47 -0.9
211,778 + GFF4573 0.53 -0.6
211,779 - GFF4573 0.53 -0.2
211,779 - GFF4573 0.53 +1.4
211,781 + GFF4573 0.53 -0.6
211,781 + GFF4573 0.53 -0.2
211,781 + GFF4573 0.53 -0.4
211,782 - GFF4573 0.53 -0.2
212,661 + GFF4574 0.28 +0.6
212,763 + GFF4574 0.38 +0.8
212,763 + GFF4574 0.38 +0.2
212,764 - GFF4574 0.38 -0.0
212,764 - GFF4574 0.38 +0.5
212,764 - GFF4574 0.38 +0.4
212,764 - GFF4574 0.38 -0.4
212,869 - GFF4574 0.49 +1.0
212,869 - GFF4574 0.49 +0.3
212,869 - GFF4574 0.49 +0.1
212,869 - GFF4574 0.49 -0.0
212,869 - GFF4574 0.49 +0.1
213,268 + GFF4574 0.89 -0.2
213,269 - GFF4574 0.89 -0.0

Or see this region's nucleotide sequence