Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF420 and GFF422 are separated by 10 nucleotides GFF422 and GFF421 overlap by 9 nucleotides
GFF420 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 454,739 to 456,301
GFF420
GFF422 - no description, at 456,312 to 456,452
GFF422
GFF421 - hypothetical protein, at 456,444 to 459,227
GFF421
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1 at 455.730 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.911 kb on - strand, within GFF420 at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.771 kb on + strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.906 kb on + strand, within GFF421 at 457.044 kb on + strand, within GFF421 at 457.044 kb on + strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.219 kb on - strand, within GFF421 at 457.219 kb on - strand, within GFF421 at 457.219 kb on - strand, within GFF421
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 455,730 + GFF420 0.63 +0.5 455,910 + GFF420 0.75 +0.4 455,910 + GFF420 0.75 -1.3 455,910 + GFF420 0.75 +0.5 455,910 + GFF420 0.75 -0.3 455,910 + GFF420 0.75 +0.4 455,910 + GFF420 0.75 -0.1 455,911 - GFF420 0.75 -0.3 456,303 + -0.2 456,303 + -0.2 456,303 + +0.8 456,303 + -1.5 456,303 + +0.5 456,303 + -0.2 456,303 + +0.3 456,303 + -1.1 456,303 + -0.5 456,303 + +0.2 456,303 + +0.3 456,303 + +0.0 456,303 + -0.3 456,303 + -0.3 456,303 + -1.8 456,303 + +0.0 456,303 + -1.3 456,303 + -0.6 456,303 + +0.3 456,303 + -0.5 456,304 - +0.8 456,304 - +0.9 456,304 - +0.6 456,304 - -0.3 456,304 - -0.1 456,304 - -0.1 456,304 - +0.3 456,304 - -0.2 456,304 - +0.2 456,304 - -0.7 456,304 - -1.2 456,304 - -0.2 456,304 - -0.7 456,400 + GFF422 0.62 -0.1 456,400 + GFF422 0.62 -0.2 456,400 + GFF422 0.62 -0.3 456,400 + GFF422 0.62 +0.3 456,400 + GFF422 0.62 +0.7 456,400 + GFF422 0.62 -0.4 456,401 - GFF422 0.63 +0.7 456,401 - GFF422 0.63 +1.3 456,401 - GFF422 0.63 +0.6 456,401 - GFF422 0.63 +0.0 456,401 - GFF422 0.63 -0.1 456,401 - GFF422 0.63 +0.3 456,401 - GFF422 0.63 -1.3 456,401 - GFF422 0.63 -0.3 456,401 - GFF422 0.63 -1.0 456,401 - GFF422 0.63 +0.7 456,401 - GFF422 0.63 +0.6 456,771 + GFF421 0.12 +0.3 456,772 - GFF421 0.12 +0.1 456,772 - GFF421 0.12 +0.1 456,772 - GFF421 0.12 +0.1 456,906 + GFF421 0.17 +0.7 457,044 + GFF421 0.22 +0.3 457,044 + GFF421 0.22 -0.4 457,045 - GFF421 0.22 -0.1 457,045 - GFF421 0.22 -0.6 457,045 - GFF421 0.22 -0.7 457,045 - GFF421 0.22 -0.1 457,218 + GFF421 0.28 -0.1 457,218 + GFF421 0.28 +0.2 457,218 + GFF421 0.28 -0.9 457,218 + GFF421 0.28 -1.5 457,219 - GFF421 0.28 +0.9 457,219 - GFF421 0.28 -0.1 457,219 - GFF421 0.28 -0.1
Or see this region's nucleotide sequence