Strain Fitness in Variovorax sp. SCN45 around GFF4173

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4171 and GFF4172 are separated by 131 nucleotidesGFF4172 and GFF4173 are separated by 97 nucleotidesGFF4173 and GFF4174 are separated by 54 nucleotides GFF4171 - hypothetical protein, at 76,489 to 77,337 GFF4171 GFF4172 - no description, at 77,469 to 78,149 GFF4172 GFF4173 - 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (EC 2.1.1.14), at 78,247 to 79,272 GFF4173 GFF4174 - FIG00919961: hypothetical protein, at 79,327 to 80,310 GFF4174 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.386 kb on + strandat 77.392 kb on + strandat 77.392 kb on + strandat 77.451 kb on + strandat 77.451 kb on + strandat 77.514 kb on - strandat 77.514 kb on - strandat 77.643 kb on + strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.728 kb on - strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on + strand, within GFF4172at 77.730 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 77.731 kb on - strand, within GFF4172at 78.125 kb on + strandat 78.128 kb on + strandat 78.192 kb on + strandat 78.192 kb on + strandat 78.193 kb on - strandat 78.193 kb on - strandat 78.376 kb on + strand, within GFF4173at 78.376 kb on + strand, within GFF4173at 78.576 kb on - strand, within GFF4173at 78.576 kb on - strand, within GFF4173at 78.576 kb on - strand, within GFF4173at 78.639 kb on - strand, within GFF4173at 78.725 kb on + strand, within GFF4173at 78.725 kb on + strand, within GFF4173at 78.725 kb on + strand, within GFF4173at 78.726 kb on - strand, within GFF4173at 78.726 kb on - strand, within GFF4173at 78.726 kb on - strand, within GFF4173at 78.842 kb on + strand, within GFF4173at 78.843 kb on - strand, within GFF4173at 78.998 kb on + strand, within GFF4173at 78.998 kb on + strand, within GFF4173at 79.284 kb on + strandat 79.284 kb on + strandat 79.284 kb on + strandat 79.284 kb on + strandat 79.284 kb on + strandat 79.285 kb on - strandat 79.285 kb on - strandat 79.286 kb on + strandat 79.286 kb on + strandat 79.370 kb on + strandat 79.371 kb on - strandat 79.372 kb on - strandat 79.442 kb on + strand, within GFF4174at 79.442 kb on + strand, within GFF4174at 79.442 kb on + strand, within GFF4174at 79.443 kb on - strand, within GFF4174at 79.443 kb on - strand, within GFF4174at 79.463 kb on + strand, within GFF4174at 79.463 kb on + strand, within GFF4174at 79.463 kb on + strand, within GFF4174at 79.464 kb on - strand, within GFF4174at 79.490 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.521 kb on - strand, within GFF4174at 79.521 kb on - strand, within GFF4174at 79.521 kb on - strand, within GFF4174at 79.521 kb on - strand, within GFF4174at 79.536 kb on - strand, within GFF4174at 79.592 kb on + strand, within GFF4174at 79.592 kb on + strand, within GFF4174at 79.592 kb on + strand, within GFF4174at 79.593 kb on - strand, within GFF4174at 79.593 kb on - strand, within GFF4174at 79.619 kb on + strand, within GFF4174at 79.619 kb on + strand, within GFF4174at 79.619 kb on + strand, within GFF4174at 79.620 kb on - strand, within GFF4174at 79.620 kb on - strand, within GFF4174at 79.688 kb on + strand, within GFF4174at 79.688 kb on + strand, within GFF4174at 79.688 kb on + strand, within GFF4174at 79.689 kb on - strand, within GFF4174at 79.763 kb on + strand, within GFF4174at 79.764 kb on - strand, within GFF4174at 79.764 kb on - strand, within GFF4174at 79.764 kb on - strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.824 kb on - strand, within GFF4174at 79.824 kb on - strand, within GFF4174at 79.824 kb on - strand, within GFF4174at 79.852 kb on + strand, within GFF4174at 79.852 kb on + strand, within GFF4174at 79.852 kb on + strand, within GFF4174at 79.852 kb on + strand, within GFF4174at 79.853 kb on - strand, within GFF4174at 79.853 kb on - strand, within GFF4174at 79.853 kb on - strand, within GFF4174at 79.853 kb on - strand, within GFF4174at 79.854 kb on - strand, within GFF4174at 79.913 kb on + strand, within GFF4174at 79.913 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.953 kb on - strand, within GFF4174at 79.953 kb on - strand, within GFF4174at 79.953 kb on - strand, within GFF4174at 79.953 kb on - strand, within GFF4174at 80.001 kb on + strand, within GFF4174at 80.002 kb on - strand, within GFF4174at 80.002 kb on - strand, within GFF4174at 80.026 kb on + strand, within GFF4174at 80.026 kb on + strand, within GFF4174at 80.108 kb on + strand, within GFF4174at 80.109 kb on - strand, within GFF4174at 80.212 kb on + strandat 80.212 kb on + strandat 80.213 kb on - strandat 80.213 kb on - strandat 80.258 kb on + strandat 80.258 kb on + strandat 80.258 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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77,252 + GFF4171 0.90 +0.6
77,252 + GFF4171 0.90 -0.1
77,252 + GFF4171 0.90 -0.5
77,252 + GFF4171 0.90 +1.6
77,252 + GFF4171 0.90 -1.2
77,252 + GFF4171 0.90 -0.2
77,252 + GFF4171 0.90 +0.7
77,252 + GFF4171 0.90 +0.0
77,252 + GFF4171 0.90 -0.3
77,252 + GFF4171 0.90 -0.1
77,252 + GFF4171 0.90 -0.6
77,253 - -1.2
77,253 - +0.0
77,253 - -1.0
77,253 - -0.4
77,253 - -0.1
77,261 + +0.9
77,261 + -1.1
77,261 + +0.0
77,261 + +0.9
77,262 - -1.1
77,262 - +0.5
77,262 - -1.4
77,262 - +0.1
77,262 - -0.4
77,291 + -0.8
77,291 + +0.1
77,291 + +0.6
77,291 + -0.5
77,291 + -0.3
77,292 - -0.2
77,292 - -1.0
77,292 - -0.6
77,292 - +0.6
77,292 - +0.6
77,292 - +1.8
77,386 + +0.1
77,392 + +0.2
77,392 + +0.0
77,451 + +0.1
77,451 + -0.3
77,514 - -0.5
77,514 - +0.7
77,643 + GFF4172 0.26 -0.2
77,728 - GFF4172 0.38 -1.4
77,728 - GFF4172 0.38 +0.2
77,728 - GFF4172 0.38 -1.2
77,730 + GFF4172 0.38 -0.1
77,730 + GFF4172 0.38 -0.4
77,730 + GFF4172 0.38 -0.2
77,730 + GFF4172 0.38 -0.0
77,730 + GFF4172 0.38 -0.3
77,730 + GFF4172 0.38 +0.6
77,730 + GFF4172 0.38 -1.4
77,730 + GFF4172 0.38 +0.1
77,730 + GFF4172 0.38 -0.2
77,730 + GFF4172 0.38 -0.4
77,730 + GFF4172 0.38 +0.3
77,730 + GFF4172 0.38 -0.2
77,730 - GFF4172 0.38 +0.0
77,731 - GFF4172 0.38 +1.6
77,731 - GFF4172 0.38 +0.7
77,731 - GFF4172 0.38 -1.4
77,731 - GFF4172 0.38 -0.4
77,731 - GFF4172 0.38 -0.5
77,731 - GFF4172 0.38 +3.2
78,125 + -0.4
78,128 + -1.7
78,192 + -0.2
78,192 + +0.2
78,193 - -0.5
78,193 - +0.3
78,376 + GFF4173 0.13 -1.1
78,376 + GFF4173 0.13 +0.1
78,576 - GFF4173 0.32 -1.7
78,576 - GFF4173 0.32 -0.4
78,576 - GFF4173 0.32 +0.7
78,639 - GFF4173 0.38 -0.0
78,725 + GFF4173 0.47 -0.0
78,725 + GFF4173 0.47 +0.3
78,725 + GFF4173 0.47 +0.2
78,726 - GFF4173 0.47 +0.5
78,726 - GFF4173 0.47 +0.0
78,726 - GFF4173 0.47 -0.2
78,842 + GFF4173 0.58 +0.9
78,843 - GFF4173 0.58 -0.2
78,998 + GFF4173 0.73 +0.2
78,998 + GFF4173 0.73 +0.3
79,284 + -0.2
79,284 + -0.1
79,284 + -0.2
79,284 + +1.1
79,284 + -0.4
79,285 - +0.1
79,285 - -1.0
79,286 + +0.5
79,286 + -0.8
79,370 + +0.4
79,371 - +0.3
79,372 - +0.0
79,442 + GFF4174 0.12 -0.2
79,442 + GFF4174 0.12 -0.3
79,442 + GFF4174 0.12 -0.7
79,443 - GFF4174 0.12 +0.4
79,443 - GFF4174 0.12 +0.0
79,463 + GFF4174 0.14 -0.5
79,463 + GFF4174 0.14 -0.7
79,463 + GFF4174 0.14 -0.3
79,464 - GFF4174 0.14 +0.9
79,490 + GFF4174 0.17 -1.0
79,520 + GFF4174 0.20 +1.6
79,520 + GFF4174 0.20 -0.7
79,520 + GFF4174 0.20 +0.1
79,520 + GFF4174 0.20 -0.0
79,520 + GFF4174 0.20 -0.5
79,521 - GFF4174 0.20 +1.4
79,521 - GFF4174 0.20 -1.4
79,521 - GFF4174 0.20 -0.3
79,521 - GFF4174 0.20 -2.2
79,536 - GFF4174 0.21 +1.0
79,592 + GFF4174 0.27 -0.8
79,592 + GFF4174 0.27 -0.4
79,592 + GFF4174 0.27 +0.2
79,593 - GFF4174 0.27 -0.4
79,593 - GFF4174 0.27 +0.1
79,619 + GFF4174 0.30 -0.6
79,619 + GFF4174 0.30 +0.9
79,619 + GFF4174 0.30 +0.3
79,620 - GFF4174 0.30 +0.6
79,620 - GFF4174 0.30 +0.2
79,688 + GFF4174 0.37 +0.4
79,688 + GFF4174 0.37 +0.0
79,688 + GFF4174 0.37 +0.8
79,689 - GFF4174 0.37 -0.1
79,763 + GFF4174 0.44 -0.3
79,764 - GFF4174 0.44 -0.8
79,764 - GFF4174 0.44 +0.4
79,764 - GFF4174 0.44 +0.9
79,823 + GFF4174 0.50 +0.0
79,823 + GFF4174 0.50 -1.0
79,823 + GFF4174 0.50 -0.1
79,823 + GFF4174 0.50 -2.6
79,823 + GFF4174 0.50 -0.3
79,823 + GFF4174 0.50 -1.6
79,824 - GFF4174 0.51 +1.0
79,824 - GFF4174 0.51 -1.1
79,824 - GFF4174 0.51 -0.1
79,852 + GFF4174 0.53 +0.8
79,852 + GFF4174 0.53 -0.0
79,852 + GFF4174 0.53 +0.2
79,852 + GFF4174 0.53 +0.7
79,853 - GFF4174 0.53 -0.2
79,853 - GFF4174 0.53 -0.7
79,853 - GFF4174 0.53 -0.1
79,853 - GFF4174 0.53 +0.2
79,854 - GFF4174 0.54 +0.4
79,913 + GFF4174 0.60 +0.2
79,913 + GFF4174 0.60 -0.1
79,952 + GFF4174 0.64 -0.7
79,952 + GFF4174 0.64 -0.3
79,952 + GFF4174 0.64 -0.0
79,952 + GFF4174 0.64 -0.6
79,952 + GFF4174 0.64 +1.2
79,952 + GFF4174 0.64 +0.1
79,953 - GFF4174 0.64 +0.6
79,953 - GFF4174 0.64 -0.3
79,953 - GFF4174 0.64 +1.6
79,953 - GFF4174 0.64 -0.3
80,001 + GFF4174 0.68 -0.3
80,002 - GFF4174 0.69 -1.2
80,002 - GFF4174 0.69 -0.6
80,026 + GFF4174 0.71 -0.5
80,026 + GFF4174 0.71 -1.1
80,108 + GFF4174 0.79 -0.0
80,109 - GFF4174 0.79 +0.0
80,212 + -1.9
80,212 + +1.9
80,213 - +0.8
80,213 - -0.5
80,258 + +0.0
80,258 + -0.6
80,258 + +0.3

Or see this region's nucleotide sequence