Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4154 and GFF4155 overlap by 4 nucleotides GFF4155 and GFF4156 overlap by 14 nucleotides GFF4156 and GFF4157 overlap by 4 nucleotides GFF4157 and GFF4158 are separated by 10 nucleotides
GFF4154 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 60,517 to 61,371
GFF4154
GFF4155 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 61,368 to 62,138
GFF4155
GFF4156 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 62,125 to 62,865
GFF4156
GFF4157 - hypothetical protein, at 62,862 to 63,812
GFF4157
GFF4158 - hypothetical protein, at 63,823 to 64,251
GFF4158
Position (kb) 62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 61.255 kb on + strand, within GFF4154 at 62.104 kb on - strand at 62.104 kb on - strand at 62.428 kb on + strand, within GFF4156 at 62.429 kb on - strand, within GFF4156 at 62.641 kb on + strand, within GFF4156 at 62.642 kb on - strand, within GFF4156 at 62.734 kb on + strand, within GFF4156 at 62.734 kb on + strand, within GFF4156 at 62.887 kb on - strand at 62.887 kb on - strand at 62.994 kb on + strand, within GFF4157 at 62.995 kb on - strand, within GFF4157 at 62.995 kb on - strand, within GFF4157
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 61,255 + GFF4154 0.86 +0.9 62,104 - +0.2 62,104 - +0.0 62,428 + GFF4156 0.41 +0.1 62,429 - GFF4156 0.41 -0.6 62,641 + GFF4156 0.70 -2.8 62,642 - GFF4156 0.70 -1.2 62,734 + GFF4156 0.82 -1.4 62,734 + GFF4156 0.82 -0.4 62,887 - +0.1 62,887 - -0.7 62,994 + GFF4157 0.14 -0.5 62,995 - GFF4157 0.14 -1.4 62,995 - GFF4157 0.14 -0.5
Or see this region's nucleotide sequence