Strain Fitness in Variovorax sp. SCN45 around GFF3962

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3961 and GFF3962 are separated by 213 nucleotidesGFF3962 and GFF3963 overlap by 11 nucleotidesGFF3963 and GFF3964 overlap by 4 nucleotides GFF3961 - ATP-dependent RNA helicase NGO0650, at 161,464 to 163,347 GFF3961 GFF3962 - Opine dehydrogenase (EC 1.5.1.28), at 163,561 to 164,634 GFF3962 GFF3963 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 164,624 to 165,628 GFF3963 GFF3964 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 165,625 to 166,428 GFF3964 Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.098 kb on + strand, within GFF3961at 163.490 kb on - strandat 163.597 kb on + strandat 163.598 kb on - strandat 163.598 kb on - strandat 163.844 kb on + strand, within GFF3962at 163.844 kb on + strand, within GFF3962at 163.845 kb on - strand, within GFF3962at 163.845 kb on - strand, within GFF3962at 163.845 kb on - strand, within GFF3962at 163.891 kb on + strand, within GFF3962at 163.891 kb on + strand, within GFF3962at 163.891 kb on + strand, within GFF3962at 163.891 kb on + strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.966 kb on + strand, within GFF3962at 163.966 kb on + strand, within GFF3962at 163.967 kb on - strand, within GFF3962at 164.039 kb on - strand, within GFF3962at 164.086 kb on + strand, within GFF3962at 164.087 kb on - strand, within GFF3962at 164.087 kb on - strand, within GFF3962at 164.311 kb on + strand, within GFF3962at 164.312 kb on - strand, within GFF3962at 164.329 kb on + strand, within GFF3962at 164.329 kb on + strand, within GFF3962at 164.329 kb on + strand, within GFF3962at 164.329 kb on + strand, within GFF3962at 164.330 kb on - strand, within GFF3962at 164.330 kb on - strand, within GFF3962at 164.330 kb on - strand, within GFF3962at 164.330 kb on - strand, within GFF3962at 164.350 kb on + strand, within GFF3962at 164.350 kb on + strand, within GFF3962at 164.350 kb on + strand, within GFF3962at 164.351 kb on - strand, within GFF3962at 164.351 kb on - strand, within GFF3962at 164.351 kb on - strand, within GFF3962at 164.422 kb on + strand, within GFF3962at 164.422 kb on + strand, within GFF3962at 164.423 kb on - strand, within GFF3962at 164.423 kb on - strand, within GFF3962at 164.423 kb on - strand, within GFF3962at 164.423 kb on - strand, within GFF3962at 164.705 kb on + strandat 164.793 kb on + strand, within GFF3963at 165.102 kb on - strand, within GFF3963at 165.102 kb on - strand, within GFF3963at 165.440 kb on + strand, within GFF3963at 165.512 kb on + strand, within GFF3963at 165.512 kb on + strand, within GFF3963at 165.513 kb on - strand, within GFF3963at 165.519 kb on - strand, within GFF3963

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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163,045 + GFF3961 0.84 -1.1
163,045 + GFF3961 0.84 +0.3
163,045 + GFF3961 0.84 +0.2
163,045 + GFF3961 0.84 -1.0
163,045 + GFF3961 0.84 -0.7
163,045 + GFF3961 0.84 +0.0
163,045 + GFF3961 0.84 -0.2
163,045 + GFF3961 0.84 +0.4
163,045 + GFF3961 0.84 -0.7
163,045 + GFF3961 0.84 +0.7
163,045 + GFF3961 0.84 -0.5
163,046 - GFF3961 0.84 +0.7
163,046 - GFF3961 0.84 -1.8
163,046 - GFF3961 0.84 -0.2
163,046 - GFF3961 0.84 -1.0
163,046 - GFF3961 0.84 -0.5
163,046 - GFF3961 0.84 +0.3
163,098 + GFF3961 0.87 +1.5
163,490 - +0.0
163,597 + +0.2
163,598 - +0.6
163,598 - -0.3
163,844 + GFF3962 0.26 -0.2
163,844 + GFF3962 0.26 -0.2
163,845 - GFF3962 0.26 +0.6
163,845 - GFF3962 0.26 -0.5
163,845 - GFF3962 0.26 -0.5
163,891 + GFF3962 0.31 -0.1
163,891 + GFF3962 0.31 +0.2
163,891 + GFF3962 0.31 -1.9
163,891 + GFF3962 0.31 -0.3
163,892 - GFF3962 0.31 +1.2
163,892 - GFF3962 0.31 +0.2
163,892 - GFF3962 0.31 -0.4
163,892 - GFF3962 0.31 -0.1
163,892 - GFF3962 0.31 +0.7
163,966 + GFF3962 0.38 -0.3
163,966 + GFF3962 0.38 +0.9
163,967 - GFF3962 0.38 -0.3
164,039 - GFF3962 0.45 +0.5
164,086 + GFF3962 0.49 -0.1
164,087 - GFF3962 0.49 +0.3
164,087 - GFF3962 0.49 +0.0
164,311 + GFF3962 0.70 -1.4
164,312 - GFF3962 0.70 -0.2
164,329 + GFF3962 0.72 +0.7
164,329 + GFF3962 0.72 +0.5
164,329 + GFF3962 0.72 -0.2
164,329 + GFF3962 0.72 +0.5
164,330 - GFF3962 0.72 +0.4
164,330 - GFF3962 0.72 -1.1
164,330 - GFF3962 0.72 +0.0
164,330 - GFF3962 0.72 +1.2
164,350 + GFF3962 0.73 -0.4
164,350 + GFF3962 0.73 -2.4
164,350 + GFF3962 0.73 +0.2
164,351 - GFF3962 0.74 +2.5
164,351 - GFF3962 0.74 -0.1
164,351 - GFF3962 0.74 -0.2
164,422 + GFF3962 0.80 +0.1
164,422 + GFF3962 0.80 -0.3
164,423 - GFF3962 0.80 -0.8
164,423 - GFF3962 0.80 +0.2
164,423 - GFF3962 0.80 -0.1
164,423 - GFF3962 0.80 -0.4
164,705 + -0.8
164,793 + GFF3963 0.17 +0.3
165,102 - GFF3963 0.48 -0.5
165,102 - GFF3963 0.48 +0.1
165,440 + GFF3963 0.81 +0.7
165,512 + GFF3963 0.88 -0.5
165,512 + GFF3963 0.88 +0.4
165,513 - GFF3963 0.88 +0.8
165,519 - GFF3963 0.89 -1.1

Or see this region's nucleotide sequence