Strain Fitness in Variovorax sp. SCN45 around GFF3804

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3802 and GFF3803 overlap by 4 nucleotidesGFF3803 and GFF3804 are separated by 31 nucleotidesGFF3804 and GFF3805 are separated by 31 nucleotides GFF3802 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 302,276 to 304,045 GFF3802 GFF3803 - hypothetical protein, at 304,042 to 304,254 GFF3803 GFF3804 - BUG/TctC family periplasmic protein, at 304,286 to 305,260 GFF3804 GFF3805 - hypothetical protein, at 305,292 to 306,476 GFF3805 Position (kb) 304 305 306Strain fitness (log2 ratio) -2 -1 0 1 2at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.441 kb on - strand, within GFF3802at 303.441 kb on - strand, within GFF3802at 303.441 kb on - strand, within GFF3802at 303.441 kb on - strand, within GFF3802at 303.620 kb on + strand, within GFF3802at 303.621 kb on - strand, within GFF3802at 303.621 kb on - strand, within GFF3802at 303.920 kb on + strandat 303.920 kb on + strandat 303.920 kb on + strandat 303.920 kb on + strandat 303.921 kb on - strandat 303.921 kb on - strandat 303.921 kb on - strandat 304.085 kb on - strand, within GFF3803at 304.233 kb on - strandat 304.365 kb on - strandat 304.547 kb on + strand, within GFF3804at 304.547 kb on + strand, within GFF3804at 304.548 kb on - strand, within GFF3804at 304.548 kb on - strand, within GFF3804at 304.548 kb on - strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.721 kb on + strand, within GFF3804at 304.721 kb on + strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.839 kb on - strand, within GFF3804at 305.294 kb on - strandat 305.302 kb on + strandat 305.303 kb on - strandat 305.303 kb on - strandat 305.303 kb on - strandat 305.521 kb on + strand, within GFF3805at 305.521 kb on + strand, within GFF3805at 305.521 kb on + strand, within GFF3805at 305.521 kb on + strand, within GFF3805at 305.521 kb on + strand, within GFF3805at 305.521 kb on + strand, within GFF3805at 305.522 kb on - strand, within GFF3805at 305.522 kb on - strand, within GFF3805at 305.522 kb on - strand, within GFF3805at 305.567 kb on - strand, within GFF3805at 305.567 kb on - strand, within GFF3805at 305.567 kb on - strand, within GFF3805at 305.567 kb on - strand, within GFF3805at 305.567 kb on - strand, within GFF3805at 305.599 kb on + strand, within GFF3805at 305.599 kb on + strand, within GFF3805at 305.599 kb on + strand, within GFF3805at 305.599 kb on + strand, within GFF3805at 305.599 kb on + strand, within GFF3805at 305.599 kb on + strand, within GFF3805at 305.599 kb on + strand, within GFF3805at 305.600 kb on - strand, within GFF3805at 305.600 kb on - strand, within GFF3805at 305.600 kb on - strand, within GFF3805at 305.600 kb on - strand, within GFF3805at 305.600 kb on - strand, within GFF3805at 305.600 kb on - strand, within GFF3805at 305.600 kb on - strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.602 kb on + strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.603 kb on - strand, within GFF3805at 305.755 kb on + strand, within GFF3805at 305.755 kb on + strand, within GFF3805at 305.755 kb on + strand, within GFF3805at 305.755 kb on + strand, within GFF3805at 305.755 kb on + strand, within GFF3805at 305.755 kb on + strand, within GFF3805at 305.755 kb on + strand, within GFF3805at 305.756 kb on - strand, within GFF3805at 305.756 kb on - strand, within GFF3805at 305.756 kb on - strand, within GFF3805at 305.756 kb on - strand, within GFF3805at 305.756 kb on - strand, within GFF3805at 305.756 kb on - strand, within GFF3805at 305.818 kb on + strand, within GFF3805at 305.818 kb on + strand, within GFF3805at 305.818 kb on + strand, within GFF3805at 305.819 kb on - strand, within GFF3805at 305.819 kb on - strand, within GFF3805at 305.819 kb on - strand, within GFF3805at 305.819 kb on - strand, within GFF3805at 305.819 kb on - strand, within GFF3805at 305.819 kb on - strand, within GFF3805at 306.049 kb on + strand, within GFF3805at 306.049 kb on + strand, within GFF3805at 306.049 kb on + strand, within GFF3805at 306.049 kb on + strand, within GFF3805at 306.050 kb on - strand, within GFF3805at 306.083 kb on - strand, within GFF3805at 306.083 kb on - strand, within GFF3805at 306.083 kb on - strand, within GFF3805at 306.083 kb on - strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.085 kb on + strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.086 kb on - strand, within GFF3805at 306.121 kb on + strand, within GFF3805at 306.121 kb on + strand, within GFF3805at 306.121 kb on + strand, within GFF3805at 306.121 kb on + strand, within GFF3805at 306.121 kb on + strand, within GFF3805at 306.121 kb on + strand, within GFF3805at 306.121 kb on + strand, within GFF3805at 306.122 kb on - strand, within GFF3805at 306.122 kb on - strand, within GFF3805at 306.122 kb on - strand, within GFF3805at 306.122 kb on - strand, within GFF3805at 306.122 kb on - strand, within GFF3805at 306.229 kb on + strand, within GFF3805at 306.229 kb on + strand, within GFF3805at 306.229 kb on + strand, within GFF3805at 306.229 kb on + strand, within GFF3805at 306.229 kb on + strand, within GFF3805at 306.229 kb on + strand, within GFF3805at 306.229 kb on + strand, within GFF3805at 306.230 kb on - strand, within GFF3805at 306.230 kb on - strand, within GFF3805

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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303,440 + GFF3802 0.66 -0.4
303,440 + GFF3802 0.66 -0.1
303,440 + GFF3802 0.66 -0.0
303,440 + GFF3802 0.66 +0.4
303,440 + GFF3802 0.66 +0.7
303,440 + GFF3802 0.66 -1.1
303,440 + GFF3802 0.66 -0.5
303,440 + GFF3802 0.66 +1.0
303,441 - GFF3802 0.66 -0.8
303,441 - GFF3802 0.66 +1.0
303,441 - GFF3802 0.66 -1.0
303,441 - GFF3802 0.66 +0.4
303,620 + GFF3802 0.76 -0.5
303,621 - GFF3802 0.76 -0.3
303,621 - GFF3802 0.76 -0.9
303,920 + -0.3
303,920 + -1.3
303,920 + +0.3
303,920 + +0.9
303,921 - +0.4
303,921 - +0.5
303,921 - +1.1
304,085 - GFF3803 0.20 -0.1
304,233 - -1.0
304,365 - -0.0
304,547 + GFF3804 0.27 +1.1
304,547 + GFF3804 0.27 +0.7
304,548 - GFF3804 0.27 -1.1
304,548 - GFF3804 0.27 +0.1
304,548 - GFF3804 0.27 +0.2
304,637 + GFF3804 0.36 -0.3
304,637 + GFF3804 0.36 -1.6
304,637 + GFF3804 0.36 +0.7
304,637 + GFF3804 0.36 -0.6
304,637 + GFF3804 0.36 +0.1
304,637 + GFF3804 0.36 -0.4
304,637 + GFF3804 0.36 +0.9
304,637 + GFF3804 0.36 -1.3
304,637 + GFF3804 0.36 -0.5
304,637 + GFF3804 0.36 -0.2
304,637 + GFF3804 0.36 +0.5
304,638 - GFF3804 0.36 -0.4
304,638 - GFF3804 0.36 -0.1
304,638 - GFF3804 0.36 -0.5
304,638 - GFF3804 0.36 -0.3
304,638 - GFF3804 0.36 -1.1
304,638 - GFF3804 0.36 +0.4
304,638 - GFF3804 0.36 -0.3
304,638 - GFF3804 0.36 +0.0
304,638 - GFF3804 0.36 +0.4
304,638 - GFF3804 0.36 +0.2
304,638 - GFF3804 0.36 +0.3
304,638 - GFF3804 0.36 -0.5
304,638 - GFF3804 0.36 +0.1
304,638 - GFF3804 0.36 +0.3
304,721 + GFF3804 0.45 -0.3
304,721 + GFF3804 0.45 +0.5
304,722 - GFF3804 0.45 -0.4
304,722 - GFF3804 0.45 -0.5
304,722 - GFF3804 0.45 +0.1
304,722 - GFF3804 0.45 +0.4
304,722 - GFF3804 0.45 +0.1
304,722 - GFF3804 0.45 -0.1
304,722 - GFF3804 0.45 -0.8
304,722 - GFF3804 0.45 +0.1
304,722 - GFF3804 0.45 -0.0
304,722 - GFF3804 0.45 -2.0
304,722 - GFF3804 0.45 -0.1
304,722 - GFF3804 0.45 -0.6
304,722 - GFF3804 0.45 +0.1
304,722 - GFF3804 0.45 +1.1
304,722 - GFF3804 0.45 -0.2
304,751 + GFF3804 0.48 +0.1
304,751 + GFF3804 0.48 -0.6
304,751 + GFF3804 0.48 +0.0
304,751 + GFF3804 0.48 -0.6
304,751 + GFF3804 0.48 -0.2
304,751 + GFF3804 0.48 +0.5
304,751 + GFF3804 0.48 -1.1
304,751 + GFF3804 0.48 -0.6
304,751 + GFF3804 0.48 -0.9
304,751 + GFF3804 0.48 +0.4
304,751 + GFF3804 0.48 -0.1
304,751 + GFF3804 0.48 +0.1
304,751 + GFF3804 0.48 -1.3
304,752 - GFF3804 0.48 -0.0
304,752 - GFF3804 0.48 +0.4
304,752 - GFF3804 0.48 -0.5
304,752 - GFF3804 0.48 +0.7
304,752 - GFF3804 0.48 +0.2
304,752 - GFF3804 0.48 +0.0
304,752 - GFF3804 0.48 +0.5
304,752 - GFF3804 0.48 +0.1
304,752 - GFF3804 0.48 +1.0
304,752 - GFF3804 0.48 +0.4
304,752 - GFF3804 0.48 -0.3
304,752 - GFF3804 0.48 +0.6
304,839 - GFF3804 0.57 -0.3
305,294 - -0.0
305,302 + -0.1
305,303 - -0.2
305,303 - +0.3
305,303 - -0.6
305,521 + GFF3805 0.19 -0.7
305,521 + GFF3805 0.19 -0.4
305,521 + GFF3805 0.19 +0.4
305,521 + GFF3805 0.19 +0.3
305,521 + GFF3805 0.19 +0.3
305,521 + GFF3805 0.19 +0.2
305,522 - GFF3805 0.19 -0.3
305,522 - GFF3805 0.19 -0.9
305,522 - GFF3805 0.19 +0.7
305,567 - GFF3805 0.23 -0.8
305,567 - GFF3805 0.23 -0.2
305,567 - GFF3805 0.23 -0.0
305,567 - GFF3805 0.23 -0.1
305,567 - GFF3805 0.23 +0.3
305,599 + GFF3805 0.26 +0.0
305,599 + GFF3805 0.26 +0.3
305,599 + GFF3805 0.26 -0.6
305,599 + GFF3805 0.26 +1.4
305,599 + GFF3805 0.26 -0.5
305,599 + GFF3805 0.26 -0.3
305,599 + GFF3805 0.26 +0.7
305,600 - GFF3805 0.26 -0.2
305,600 - GFF3805 0.26 -0.9
305,600 - GFF3805 0.26 +0.8
305,600 - GFF3805 0.26 -2.1
305,600 - GFF3805 0.26 +1.7
305,600 - GFF3805 0.26 -0.9
305,600 - GFF3805 0.26 +0.2
305,602 + GFF3805 0.26 -0.9
305,602 + GFF3805 0.26 -0.9
305,602 + GFF3805 0.26 -0.7
305,602 + GFF3805 0.26 -0.2
305,602 + GFF3805 0.26 -0.8
305,602 + GFF3805 0.26 -0.1
305,602 + GFF3805 0.26 +1.0
305,602 + GFF3805 0.26 -0.6
305,602 + GFF3805 0.26 +1.2
305,602 + GFF3805 0.26 -0.3
305,602 + GFF3805 0.26 -0.0
305,602 + GFF3805 0.26 -1.4
305,602 + GFF3805 0.26 +0.3
305,603 - GFF3805 0.26 +0.7
305,603 - GFF3805 0.26 -0.1
305,603 - GFF3805 0.26 -1.0
305,603 - GFF3805 0.26 -1.3
305,603 - GFF3805 0.26 +0.2
305,603 - GFF3805 0.26 +0.7
305,603 - GFF3805 0.26 -0.2
305,603 - GFF3805 0.26 +1.0
305,603 - GFF3805 0.26 -0.4
305,603 - GFF3805 0.26 +1.0
305,603 - GFF3805 0.26 -0.2
305,603 - GFF3805 0.26 -2.3
305,603 - GFF3805 0.26 +0.1
305,603 - GFF3805 0.26 +0.1
305,603 - GFF3805 0.26 +0.1
305,603 - GFF3805 0.26 -1.2
305,755 + GFF3805 0.39 -0.8
305,755 + GFF3805 0.39 -0.0
305,755 + GFF3805 0.39 +0.3
305,755 + GFF3805 0.39 -0.3
305,755 + GFF3805 0.39 +1.0
305,755 + GFF3805 0.39 +1.4
305,755 + GFF3805 0.39 +0.0
305,756 - GFF3805 0.39 -0.2
305,756 - GFF3805 0.39 -1.1
305,756 - GFF3805 0.39 -0.1
305,756 - GFF3805 0.39 +0.6
305,756 - GFF3805 0.39 -1.0
305,756 - GFF3805 0.39 -1.9
305,818 + GFF3805 0.44 +0.2
305,818 + GFF3805 0.44 +0.1
305,818 + GFF3805 0.44 +0.3
305,819 - GFF3805 0.44 +0.3
305,819 - GFF3805 0.44 -0.7
305,819 - GFF3805 0.44 +0.1
305,819 - GFF3805 0.44 +0.4
305,819 - GFF3805 0.44 -0.8
305,819 - GFF3805 0.44 -0.5
306,049 + GFF3805 0.64 -0.1
306,049 + GFF3805 0.64 +0.5
306,049 + GFF3805 0.64 -0.2
306,049 + GFF3805 0.64 +0.3
306,050 - GFF3805 0.64 +0.8
306,083 - GFF3805 0.67 -0.6
306,083 - GFF3805 0.67 +0.2
306,083 - GFF3805 0.67 -0.4
306,083 - GFF3805 0.67 +0.6
306,085 + GFF3805 0.67 +0.1
306,085 + GFF3805 0.67 -0.6
306,085 + GFF3805 0.67 -0.3
306,085 + GFF3805 0.67 -1.5
306,085 + GFF3805 0.67 +0.8
306,085 + GFF3805 0.67 +1.0
306,085 + GFF3805 0.67 -0.6
306,085 + GFF3805 0.67 -0.3
306,085 + GFF3805 0.67 -1.0
306,085 + GFF3805 0.67 -0.5
306,085 + GFF3805 0.67 -0.5
306,085 + GFF3805 0.67 +0.3
306,085 + GFF3805 0.67 -0.3
306,085 + GFF3805 0.67 -0.2
306,085 + GFF3805 0.67 -1.7
306,085 + GFF3805 0.67 -0.1
306,085 + GFF3805 0.67 -0.2
306,086 - GFF3805 0.67 -1.0
306,086 - GFF3805 0.67 +0.7
306,086 - GFF3805 0.67 +0.1
306,086 - GFF3805 0.67 -0.3
306,086 - GFF3805 0.67 +0.1
306,086 - GFF3805 0.67 -0.9
306,086 - GFF3805 0.67 +0.6
306,086 - GFF3805 0.67 +0.5
306,086 - GFF3805 0.67 +1.4
306,086 - GFF3805 0.67 +0.2
306,086 - GFF3805 0.67 +0.1
306,086 - GFF3805 0.67 +0.7
306,086 - GFF3805 0.67 -0.2
306,086 - GFF3805 0.67 +0.4
306,086 - GFF3805 0.67 +0.2
306,086 - GFF3805 0.67 -0.1
306,086 - GFF3805 0.67 +0.5
306,086 - GFF3805 0.67 -1.1
306,086 - GFF3805 0.67 -0.0
306,121 + GFF3805 0.70 -0.2
306,121 + GFF3805 0.70 -0.4
306,121 + GFF3805 0.70 -0.2
306,121 + GFF3805 0.70 -0.3
306,121 + GFF3805 0.70 +0.9
306,121 + GFF3805 0.70 -0.5
306,121 + GFF3805 0.70 -1.5
306,122 - GFF3805 0.70 -0.0
306,122 - GFF3805 0.70 -0.1
306,122 - GFF3805 0.70 -1.3
306,122 - GFF3805 0.70 +0.1
306,122 - GFF3805 0.70 +2.0
306,229 + GFF3805 0.79 +1.1
306,229 + GFF3805 0.79 -0.1
306,229 + GFF3805 0.79 -0.1
306,229 + GFF3805 0.79 +0.2
306,229 + GFF3805 0.79 +1.3
306,229 + GFF3805 0.79 -0.9
306,229 + GFF3805 0.79 -0.1
306,230 - GFF3805 0.79 -0.7
306,230 - GFF3805 0.79 -0.2

Or see this region's nucleotide sequence