Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3789 and GFF3790 are separated by 1 nucleotides GFF3790 and GFF3791 are separated by 69 nucleotides GFF3791 and GFF3792 are separated by 57 nucleotides GFF3792 and GFF3793 are separated by 138 nucleotides
GFF3789 - hypothetical protein, at 286,643 to 287,017
GFF3789
GFF3790 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 287,019 to 287,885
GFF3790
GFF3791 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 287,955 to 289,289
GFF3791
GFF3792 - no description, at 289,347 to 289,751
GFF3792
GFF3793 - no description, at 289,890 to 290,471
GFF3793
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 286.982 kb on + strand at 286.983 kb on - strand at 287.006 kb on + strand at 287.020 kb on + strand at 287.021 kb on - strand at 287.021 kb on - strand at 287.021 kb on - strand at 287.142 kb on - strand, within GFF3790 at 287.209 kb on + strand, within GFF3790 at 287.209 kb on + strand, within GFF3790 at 287.210 kb on - strand, within GFF3790 at 287.257 kb on + strand, within GFF3790 at 287.359 kb on + strand, within GFF3790 at 287.360 kb on - strand, within GFF3790 at 287.360 kb on - strand, within GFF3790 at 287.474 kb on - strand, within GFF3790 at 287.474 kb on - strand, within GFF3790 at 287.492 kb on - strand, within GFF3790 at 287.492 kb on - strand, within GFF3790 at 287.492 kb on - strand, within GFF3790 at 287.734 kb on - strand, within GFF3790 at 287.756 kb on - strand, within GFF3790 at 287.854 kb on + strand at 287.854 kb on + strand at 287.873 kb on + strand at 287.874 kb on - strand at 288.328 kb on - strand, within GFF3791 at 288.328 kb on - strand, within GFF3791 at 288.328 kb on - strand, within GFF3791 at 288.385 kb on - strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.642 kb on + strand, within GFF3791 at 288.643 kb on - strand, within GFF3791 at 288.643 kb on - strand, within GFF3791 at 288.661 kb on - strand, within GFF3791 at 288.765 kb on + strand, within GFF3791 at 288.765 kb on + strand, within GFF3791 at 288.766 kb on - strand, within GFF3791 at 288.766 kb on - strand, within GFF3791 at 288.768 kb on + strand, within GFF3791 at 288.768 kb on + strand, within GFF3791 at 288.858 kb on + strand, within GFF3791 at 288.859 kb on - strand, within GFF3791 at 288.859 kb on - strand, within GFF3791 at 288.915 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 289.140 kb on + strand, within GFF3791 at 289.218 kb on + strand at 289.218 kb on + strand at 289.218 kb on + strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.384 kb on + strand at 289.385 kb on - strand at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.810 kb on + strand at 290.112 kb on + strand, within GFF3793 at 290.115 kb on + strand, within GFF3793 at 290.115 kb on + strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.155 kb on - strand, within GFF3793
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 286,982 + -0.3 286,983 - -1.5 287,006 + +0.6 287,020 + +0.0 287,021 - +0.2 287,021 - +0.1 287,021 - -3.4 287,142 - GFF3790 0.14 +0.1 287,209 + GFF3790 0.22 -1.4 287,209 + GFF3790 0.22 -1.0 287,210 - GFF3790 0.22 -2.3 287,257 + GFF3790 0.27 -0.8 287,359 + GFF3790 0.39 -2.3 287,360 - GFF3790 0.39 -1.1 287,360 - GFF3790 0.39 -1.4 287,474 - GFF3790 0.52 -1.1 287,474 - GFF3790 0.52 -1.5 287,492 - GFF3790 0.55 -0.6 287,492 - GFF3790 0.55 -1.3 287,492 - GFF3790 0.55 -0.3 287,734 - GFF3790 0.82 -1.1 287,756 - GFF3790 0.85 +0.4 287,854 + +0.1 287,854 + -1.0 287,873 + +0.1 287,874 - -1.8 288,328 - GFF3791 0.28 -1.1 288,328 - GFF3791 0.28 +0.3 288,328 - GFF3791 0.28 -0.3 288,385 - GFF3791 0.32 -0.8 288,510 + GFF3791 0.42 -0.5 288,510 + GFF3791 0.42 -0.3 288,510 + GFF3791 0.42 +0.2 288,510 + GFF3791 0.42 +0.1 288,510 + GFF3791 0.42 -0.8 288,510 + GFF3791 0.42 +0.3 288,510 + GFF3791 0.42 +1.1 288,510 + GFF3791 0.42 -0.1 288,510 + GFF3791 0.42 -0.4 288,510 + GFF3791 0.42 -0.9 288,510 + GFF3791 0.42 +0.8 288,510 + GFF3791 0.42 +0.0 288,510 + GFF3791 0.42 -0.2 288,511 - GFF3791 0.42 -0.1 288,511 - GFF3791 0.42 +0.2 288,511 - GFF3791 0.42 -1.3 288,511 - GFF3791 0.42 -0.1 288,511 - GFF3791 0.42 -0.4 288,511 - GFF3791 0.42 -0.1 288,511 - GFF3791 0.42 -0.6 288,511 - GFF3791 0.42 -0.7 288,511 - GFF3791 0.42 -0.8 288,642 + GFF3791 0.51 +0.0 288,643 - GFF3791 0.52 -0.0 288,643 - GFF3791 0.52 +0.0 288,661 - GFF3791 0.53 -0.2 288,765 + GFF3791 0.61 +1.1 288,765 + GFF3791 0.61 +0.3 288,766 - GFF3791 0.61 +0.1 288,766 - GFF3791 0.61 +0.0 288,768 + GFF3791 0.61 -0.0 288,768 + GFF3791 0.61 -0.5 288,858 + GFF3791 0.68 +0.6 288,859 - GFF3791 0.68 -0.2 288,859 - GFF3791 0.68 +1.2 288,915 + GFF3791 0.72 +1.0 288,921 + GFF3791 0.72 +0.5 288,921 + GFF3791 0.72 -0.9 288,921 + GFF3791 0.72 +0.1 288,921 + GFF3791 0.72 -0.2 289,140 + GFF3791 0.89 +0.7 289,218 + +0.5 289,218 + -0.2 289,218 + -0.3 289,219 - +0.1 289,219 - -0.1 289,219 - +0.7 289,219 - -0.5 289,219 - -0.3 289,384 + -0.3 289,385 - +0.6 289,558 + GFF3792 0.52 -1.1 289,558 + GFF3792 0.52 -1.1 289,558 + GFF3792 0.52 -0.0 289,558 + GFF3792 0.52 +2.0 289,558 + GFF3792 0.52 -0.6 289,558 + GFF3792 0.52 +1.3 289,558 + GFF3792 0.52 +0.5 289,558 + GFF3792 0.52 -0.2 289,558 + GFF3792 0.52 +0.3 289,559 - GFF3792 0.52 -0.2 289,559 - GFF3792 0.52 +0.9 289,559 - GFF3792 0.52 -1.5 289,559 - GFF3792 0.52 -0.2 289,559 - GFF3792 0.52 +0.0 289,625 - GFF3792 0.69 -0.5 289,625 - GFF3792 0.69 +0.1 289,625 - GFF3792 0.69 -0.6 289,810 + -0.7 290,112 + GFF3793 0.38 +0.4 290,115 + GFF3793 0.39 -0.9 290,115 + GFF3793 0.39 -0.5 290,116 - GFF3793 0.39 +0.2 290,116 - GFF3793 0.39 -0.0 290,116 - GFF3793 0.39 -1.1 290,154 + GFF3793 0.45 -0.1 290,154 + GFF3793 0.45 +0.4 290,154 + GFF3793 0.45 -0.3 290,155 - GFF3793 0.46 -1.7
Or see this region's nucleotide sequence