Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3705 and GFF3706 overlap by 4 nucleotides GFF3706 and GFF3707 overlap by 4 nucleotides GFF3707 and GFF3708 are separated by 19 nucleotides
GFF3705 - Amidases related to nicotinamidase, at 205,086 to 205,760
GFF3705
GFF3706 - ABC transporter, permease protein 2 (cluster 11, riboflavin/purine nucleoside/unknown), at 205,757 to 206,689
GFF3706
GFF3707 - ABC transporter, permease protein 1 (cluster 11, riboflavin/purine nucleoside/unknown), at 206,686 to 207,807
GFF3707
GFF3708 - ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown) / ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 207,827 to 209,353
GFF3708
Position (kb) 206
207
208 Strain fitness (log2 ratio) -2
-1
0
1 at 205.703 kb on - strand at 205.779 kb on + strand at 205.779 kb on + strand at 205.779 kb on + strand at 205.779 kb on + strand at 205.779 kb on + strand at 205.780 kb on - strand at 205.780 kb on - strand at 205.780 kb on - strand at 205.780 kb on - strand at 205.780 kb on - strand at 205.863 kb on + strand, within GFF3706 at 205.884 kb on + strand, within GFF3706 at 205.885 kb on - strand, within GFF3706 at 206.070 kb on + strand, within GFF3706 at 206.070 kb on + strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.657 kb on - strand at 206.774 kb on - strand at 206.774 kb on - strand at 206.774 kb on - strand at 206.805 kb on - strand, within GFF3707 at 206.805 kb on - strand, within GFF3707 at 206.805 kb on - strand, within GFF3707 at 206.930 kb on + strand, within GFF3707 at 206.930 kb on + strand, within GFF3707 at 207.020 kb on + strand, within GFF3707 at 207.020 kb on + strand, within GFF3707 at 207.089 kb on + strand, within GFF3707 at 207.089 kb on + strand, within GFF3707 at 207.254 kb on + strand, within GFF3707 at 207.255 kb on - strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.288 kb on - strand, within GFF3707 at 207.288 kb on - strand, within GFF3707 at 207.727 kb on + strand at 207.728 kb on - strand at 207.728 kb on - strand at 207.728 kb on - strand at 208.203 kb on - strand, within GFF3708 at 208.266 kb on + strand, within GFF3708 at 208.266 kb on + strand, within GFF3708 at 208.709 kb on + strand, within GFF3708 at 208.728 kb on + strand, within GFF3708 at 208.728 kb on + strand, within GFF3708
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 205,703 - -2.6 205,779 + +0.6 205,779 + -0.8 205,779 + -0.0 205,779 + -0.0 205,779 + -0.4 205,780 - -0.6 205,780 - +0.1 205,780 - +0.5 205,780 - -1.3 205,780 - -0.7 205,863 + GFF3706 0.11 +0.7 205,884 + GFF3706 0.14 -1.2 205,885 - GFF3706 0.14 +1.7 206,070 + GFF3706 0.34 -0.5 206,070 + GFF3706 0.34 -0.8 206,071 - GFF3706 0.34 -0.9 206,071 - GFF3706 0.34 +0.3 206,071 - GFF3706 0.34 -0.7 206,071 - GFF3706 0.34 -0.4 206,071 - GFF3706 0.34 -0.6 206,071 - GFF3706 0.34 +1.7 206,657 - +0.1 206,774 - +0.2 206,774 - -0.9 206,774 - -0.4 206,805 - GFF3707 0.11 +0.7 206,805 - GFF3707 0.11 +0.2 206,805 - GFF3707 0.11 -0.8 206,930 + GFF3707 0.22 -0.7 206,930 + GFF3707 0.22 -0.3 207,020 + GFF3707 0.30 +0.1 207,020 + GFF3707 0.30 -0.2 207,089 + GFF3707 0.36 -0.2 207,089 + GFF3707 0.36 +1.3 207,254 + GFF3707 0.51 +0.2 207,255 - GFF3707 0.51 +1.0 207,287 + GFF3707 0.54 +0.6 207,287 + GFF3707 0.54 -0.9 207,287 + GFF3707 0.54 -0.3 207,288 - GFF3707 0.54 +0.5 207,288 - GFF3707 0.54 -0.2 207,727 + +0.2 207,728 - +0.6 207,728 - -0.1 207,728 - -0.4 208,203 - GFF3708 0.25 +0.3 208,266 + GFF3708 0.29 +0.1 208,266 + GFF3708 0.29 -0.6 208,709 + GFF3708 0.58 -0.7 208,728 + GFF3708 0.59 +0.5 208,728 + GFF3708 0.59 -0.9
Or see this region's nucleotide sequence