Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3700 and GFF3701 are separated by 126 nucleotides GFF3701 and GFF3702 are separated by 5 nucleotides GFF3702 and GFF3703 are separated by 126 nucleotides GFF3703 and GFF3704 are separated by 45 nucleotides
GFF3700 - FIG006285: hypothetical protein, at 201,318 to 202,016
GFF3700
GFF3701 - FIG004694: Hypothetical protein, at 202,143 to 202,670
GFF3701
GFF3702 - Beta-propeller domains of methanol dehydrogenase type, at 202,676 to 203,533
GFF3702
GFF3703 - LemA family protein, at 203,660 to 204,259
GFF3703
GFF3704 - FIG00536957: hypothetical protein, at 204,305 to 205,063
GFF3704
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1 at 202.152 kb on + strand at 202.152 kb on + strand at 202.152 kb on + strand at 202.153 kb on - strand at 202.153 kb on - strand at 202.153 kb on - strand at 202.384 kb on + strand, within GFF3701 at 202.384 kb on + strand, within GFF3701 at 202.384 kb on + strand, within GFF3701 at 202.384 kb on + strand, within GFF3701 at 202.384 kb on + strand, within GFF3701 at 202.385 kb on - strand, within GFF3701 at 202.385 kb on - strand, within GFF3701 at 202.385 kb on - strand, within GFF3701 at 202.385 kb on - strand, within GFF3701 at 202.480 kb on + strand, within GFF3701 at 202.480 kb on + strand, within GFF3701 at 202.481 kb on - strand, within GFF3701 at 202.481 kb on - strand, within GFF3701 at 202.481 kb on - strand, within GFF3701 at 203.328 kb on + strand, within GFF3702 at 203.661 kb on + strand at 203.745 kb on + strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.820 kb on + strand, within GFF3703 at 204.136 kb on - strand, within GFF3703 at 204.198 kb on + strand, within GFF3703 at 204.199 kb on - strand, within GFF3703 at 204.199 kb on - strand, within GFF3703 at 204.266 kb on + strand at 204.266 kb on + strand at 204.267 kb on - strand at 204.267 kb on - strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 202,152 + -0.9 202,152 + -1.3 202,152 + -0.3 202,153 - -0.8 202,153 - -0.0 202,153 - -0.4 202,384 + GFF3701 0.46 +0.7 202,384 + GFF3701 0.46 -0.2 202,384 + GFF3701 0.46 -1.2 202,384 + GFF3701 0.46 -0.7 202,384 + GFF3701 0.46 +0.3 202,385 - GFF3701 0.46 +0.2 202,385 - GFF3701 0.46 +0.2 202,385 - GFF3701 0.46 -0.2 202,385 - GFF3701 0.46 -1.9 202,480 + GFF3701 0.64 +0.6 202,480 + GFF3701 0.64 -0.1 202,481 - GFF3701 0.64 +1.3 202,481 - GFF3701 0.64 +0.3 202,481 - GFF3701 0.64 +0.5 203,328 + GFF3702 0.76 +0.4 203,661 + +0.1 203,745 + GFF3703 0.14 -0.4 203,800 - GFF3703 0.23 +0.1 203,800 - GFF3703 0.23 -1.1 203,800 - GFF3703 0.23 -0.7 203,800 - GFF3703 0.23 +0.9 203,800 - GFF3703 0.23 +0.4 203,800 - GFF3703 0.23 -2.6 203,800 - GFF3703 0.23 +0.3 203,820 + GFF3703 0.27 +0.9 204,136 - GFF3703 0.79 +0.2 204,198 + GFF3703 0.90 -0.1 204,199 - GFF3703 0.90 -0.3 204,199 - GFF3703 0.90 +0.9 204,266 + +0.3 204,266 + -1.3 204,267 - -1.2 204,267 - +1.1 204,290 + +0.9 204,290 + -0.5 204,290 + -0.5 204,290 + -0.1 204,290 + -0.2 204,295 + -1.1 204,295 + +1.7 204,295 + -0.8 204,295 + +0.2 204,295 + +0.4 204,295 + -0.4 204,295 + +0.4 204,295 + -0.3 204,295 + +0.5 204,296 - -0.7 204,296 - -0.4 204,296 - -0.0 204,296 - -1.5 204,296 - +0.2 204,296 - +0.2 204,296 - +0.1 204,296 - +0.4 204,296 - +0.4 204,296 - -0.4 204,296 - -0.8 204,296 - +1.0 204,296 - -1.3 204,296 - -0.8 204,296 - +0.5
Or see this region's nucleotide sequence