Strain Fitness in Variovorax sp. SCN45 around GFF361

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF360 and GFF361 are separated by 131 nucleotidesGFF361 and GFF362 are separated by 11 nucleotidesGFF362 and GFF363 are separated by 61 nucleotides GFF360 - Putative transporter, at 390,171 to 391,328 GFF360 GFF361 - 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / Enoyl CoA hydratase (EC 4.2.1.17), at 391,460 to 392,980 GFF361 GFF362 - Enoyl-CoA hydratase (EC 4.2.1.17), at 392,992 to 393,771 GFF362 GFF363 - Transcriptional regulator, Crp/Fnr family, at 393,833 to 394,552 GFF363 Position (kb) 391 392 393Strain fitness (log2 ratio) -2 -1 0 1at 390.646 kb on + strand, within GFF360at 390.646 kb on + strand, within GFF360at 390.646 kb on + strand, within GFF360at 390.646 kb on + strand, within GFF360at 390.646 kb on + strand, within GFF360at 390.646 kb on + strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.647 kb on - strand, within GFF360at 390.846 kb on + strand, within GFF360at 390.847 kb on - strand, within GFF360at 390.847 kb on - strand, within GFF360at 390.847 kb on - strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.182 kb on + strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.183 kb on - strand, within GFF360at 391.345 kb on - strandat 391.431 kb on - strandat 391.472 kb on + strandat 391.472 kb on + strandat 391.472 kb on + strandat 391.472 kb on + strandat 391.472 kb on + strandat 391.472 kb on + strandat 391.472 kb on + strandat 391.472 kb on + strandat 391.473 kb on - strandat 391.473 kb on - strandat 391.473 kb on - strandat 391.473 kb on - strandat 391.473 kb on - strandat 391.473 kb on - strandat 391.491 kb on + strandat 391.491 kb on + strandat 391.492 kb on - strandat 391.492 kb on - strandat 391.492 kb on - strandat 391.664 kb on + strand, within GFF361at 391.664 kb on + strand, within GFF361at 391.664 kb on + strand, within GFF361at 391.664 kb on + strand, within GFF361at 391.665 kb on - strand, within GFF361at 391.665 kb on - strand, within GFF361at 391.993 kb on + strand, within GFF361at 391.993 kb on + strand, within GFF361at 392.052 kb on - strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.207 kb on + strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.208 kb on - strand, within GFF361at 392.216 kb on + strand, within GFF361at 392.216 kb on + strand, within GFF361at 392.216 kb on + strand, within GFF361at 392.217 kb on - strand, within GFF361at 392.217 kb on - strand, within GFF361at 392.306 kb on + strand, within GFF361at 392.306 kb on + strand, within GFF361at 392.306 kb on + strand, within GFF361at 392.307 kb on - strand, within GFF361at 392.307 kb on - strand, within GFF361at 392.312 kb on + strand, within GFF361at 392.313 kb on - strand, within GFF361at 392.816 kb on + strand, within GFF361at 392.897 kb on + strandat 392.897 kb on + strandat 392.897 kb on + strandat 392.897 kb on + strandat 392.897 kb on + strandat 392.898 kb on - strandat 392.898 kb on - strandat 392.898 kb on - strandat 392.898 kb on - strandat 392.912 kb on + strandat 392.979 kb on - strandat 393.085 kb on + strand, within GFF362at 393.085 kb on + strand, within GFF362at 393.085 kb on + strand, within GFF362at 393.085 kb on + strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.086 kb on - strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.394 kb on + strand, within GFF362at 393.395 kb on - strand, within GFF362at 393.763 kb on + strandat 393.764 kb on - strandat 393.764 kb on - strandat 393.764 kb on - strandat 393.764 kb on - strandat 393.850 kb on + strandat 393.850 kb on + strandat 393.850 kb on + strandat 393.850 kb on + strandat 393.850 kb on + strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.851 kb on - strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.900 kb on + strandat 393.901 kb on - strandat 393.901 kb on - strandat 393.901 kb on - strandat 393.901 kb on - strandat 393.901 kb on - strandat 393.913 kb on - strand, within GFF363at 393.950 kb on + strand, within GFF363at 393.950 kb on + strand, within GFF363at 393.950 kb on + strand, within GFF363at 393.951 kb on - strand, within GFF363at 393.951 kb on - strand, within GFF363

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
390,646 + GFF360 0.41 -0.4
390,646 + GFF360 0.41 +0.1
390,646 + GFF360 0.41 +0.6
390,646 + GFF360 0.41 -0.5
390,646 + GFF360 0.41 +0.1
390,646 + GFF360 0.41 -0.3
390,647 - GFF360 0.41 +0.6
390,647 - GFF360 0.41 -0.4
390,647 - GFF360 0.41 +0.1
390,647 - GFF360 0.41 -1.0
390,647 - GFF360 0.41 +1.3
390,647 - GFF360 0.41 +0.1
390,647 - GFF360 0.41 -1.0
390,647 - GFF360 0.41 -0.4
390,647 - GFF360 0.41 -0.6
390,647 - GFF360 0.41 -2.2
390,846 + GFF360 0.58 +0.7
390,847 - GFF360 0.58 -0.2
390,847 - GFF360 0.58 -0.3
390,847 - GFF360 0.58 -0.2
391,182 + GFF360 0.87 -0.4
391,182 + GFF360 0.87 -0.8
391,182 + GFF360 0.87 -0.2
391,182 + GFF360 0.87 +0.2
391,182 + GFF360 0.87 -0.8
391,182 + GFF360 0.87 -1.3
391,182 + GFF360 0.87 +0.3
391,182 + GFF360 0.87 +0.1
391,182 + GFF360 0.87 +0.1
391,183 - GFF360 0.87 -0.5
391,183 - GFF360 0.87 -0.5
391,183 - GFF360 0.87 -0.1
391,183 - GFF360 0.87 -0.0
391,183 - GFF360 0.87 -2.0
391,183 - GFF360 0.87 +0.9
391,183 - GFF360 0.87 +0.2
391,183 - GFF360 0.87 -1.5
391,183 - GFF360 0.87 -0.7
391,345 - -0.4
391,431 - -0.4
391,472 + +0.6
391,472 + -0.0
391,472 + -0.2
391,472 + +0.2
391,472 + +0.3
391,472 + -0.3
391,472 + -0.9
391,472 + -0.9
391,473 - -1.1
391,473 - -0.4
391,473 - -0.3
391,473 - -1.0
391,473 - -0.9
391,473 - -0.0
391,491 + -0.9
391,491 + +0.1
391,492 - -0.3
391,492 - -0.4
391,492 - -1.1
391,664 + GFF361 0.13 -0.7
391,664 + GFF361 0.13 -1.5
391,664 + GFF361 0.13 +0.2
391,664 + GFF361 0.13 +0.3
391,665 - GFF361 0.13 -0.1
391,665 - GFF361 0.13 -1.5
391,993 + GFF361 0.35 -0.6
391,993 + GFF361 0.35 +0.6
392,052 - GFF361 0.39 -0.2
392,207 + GFF361 0.49 -0.3
392,207 + GFF361 0.49 -0.2
392,207 + GFF361 0.49 +0.5
392,207 + GFF361 0.49 +0.7
392,207 + GFF361 0.49 -0.3
392,207 + GFF361 0.49 -0.2
392,207 + GFF361 0.49 +0.6
392,208 - GFF361 0.49 +0.2
392,208 - GFF361 0.49 -0.8
392,208 - GFF361 0.49 -0.7
392,208 - GFF361 0.49 +0.9
392,208 - GFF361 0.49 -0.1
392,208 - GFF361 0.49 -0.1
392,208 - GFF361 0.49 -0.2
392,208 - GFF361 0.49 -0.2
392,208 - GFF361 0.49 -0.3
392,208 - GFF361 0.49 +0.3
392,208 - GFF361 0.49 -0.7
392,216 + GFF361 0.50 -0.2
392,216 + GFF361 0.50 -1.3
392,216 + GFF361 0.50 +0.3
392,217 - GFF361 0.50 +0.8
392,217 - GFF361 0.50 -0.4
392,306 + GFF361 0.56 +0.7
392,306 + GFF361 0.56 -1.0
392,306 + GFF361 0.56 -1.7
392,307 - GFF361 0.56 +1.3
392,307 - GFF361 0.56 -0.0
392,312 + GFF361 0.56 -0.7
392,313 - GFF361 0.56 -0.2
392,816 + GFF361 0.89 -0.8
392,897 + -0.8
392,897 + +0.7
392,897 + -0.4
392,897 + -0.1
392,897 + -0.6
392,898 - -0.7
392,898 - -0.1
392,898 - -0.1
392,898 - -0.3
392,912 + -0.7
392,979 - -0.8
393,085 + GFF362 0.12 +0.0
393,085 + GFF362 0.12 +0.0
393,085 + GFF362 0.12 -1.2
393,085 + GFF362 0.12 -0.1
393,086 - GFF362 0.12 +0.3
393,086 - GFF362 0.12 +1.0
393,086 - GFF362 0.12 -1.3
393,086 - GFF362 0.12 -0.2
393,086 - GFF362 0.12 -0.5
393,086 - GFF362 0.12 +1.0
393,086 - GFF362 0.12 +0.7
393,394 + GFF362 0.52 +0.4
393,394 + GFF362 0.52 -0.5
393,394 + GFF362 0.52 -1.0
393,394 + GFF362 0.52 -0.3
393,394 + GFF362 0.52 +0.7
393,394 + GFF362 0.52 -0.3
393,394 + GFF362 0.52 +0.6
393,395 - GFF362 0.52 +0.9
393,763 + -1.3
393,764 - -1.9
393,764 - -0.5
393,764 - -0.1
393,764 - -0.9
393,850 + -0.7
393,850 + +0.4
393,850 + -1.7
393,850 + +0.3
393,850 + +0.3
393,851 - -0.2
393,851 - +0.1
393,851 - -0.3
393,851 - -0.2
393,851 - +0.6
393,851 - +0.5
393,851 - +0.9
393,900 + -0.1
393,900 + -1.1
393,900 + -0.1
393,900 + -1.1
393,900 + -0.6
393,900 + -0.2
393,901 - -0.5
393,901 - -2.2
393,901 - +0.4
393,901 - +0.3
393,901 - -0.5
393,913 - GFF363 0.11 +0.5
393,950 + GFF363 0.16 -0.5
393,950 + GFF363 0.16 -0.7
393,950 + GFF363 0.16 -0.5
393,951 - GFF363 0.16 +0.1
393,951 - GFF363 0.16 +0.3

Or see this region's nucleotide sequence