Strain Fitness in Variovorax sp. SCN45 around GFF3551

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3550 and GFF3551 overlap by 4 nucleotidesGFF3551 and GFF3552 are separated by 8 nucleotides GFF3550 - hypothetical protein, at 55,800 to 57,335 GFF3550 GFF3551 - MoxR-like ATPases, at 57,332 to 58,411 GFF3551 GFF3552 - Hsp90xo protein, at 58,420 to 60,282 GFF3552 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1at 56.733 kb on + strand, within GFF3550at 56.733 kb on + strand, within GFF3550at 56.734 kb on - strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.319 kb on - strandat 57.390 kb on + strandat 57.390 kb on + strandat 57.391 kb on - strandat 57.391 kb on - strandat 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.456 kb on - strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.527 kb on + strand, within GFF3551at 57.572 kb on + strand, within GFF3551at 57.572 kb on + strand, within GFF3551at 57.573 kb on - strand, within GFF3551at 57.573 kb on - strand, within GFF3551at 57.689 kb on + strand, within GFF3551at 57.701 kb on + strand, within GFF3551at 58.340 kb on + strandat 58.340 kb on + strandat 58.340 kb on + strandat 58.341 kb on - strandat 58.341 kb on - strandat 58.386 kb on - strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.522 kb on + strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.708 kb on + strand, within GFF3552at 58.732 kb on + strand, within GFF3552at 58.732 kb on + strand, within GFF3552at 58.733 kb on - strand, within GFF3552at 59.017 kb on + strand, within GFF3552at 59.254 kb on + strand, within GFF3552at 59.254 kb on + strand, within GFF3552at 59.254 kb on + strand, within GFF3552at 59.254 kb on + strand, within GFF3552at 59.255 kb on - strand, within GFF3552at 59.255 kb on - strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.287 kb on + strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552at 59.288 kb on - strand, within GFF3552

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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56,733 + GFF3550 0.61 +0.7
56,733 + GFF3550 0.61 +0.1
56,734 - GFF3550 0.61 +0.5
57,138 + GFF3550 0.87 +1.7
57,138 + GFF3550 0.87 -0.3
57,138 + GFF3550 0.87 -0.4
57,138 + GFF3550 0.87 -0.3
57,138 + GFF3550 0.87 -0.5
57,138 + GFF3550 0.87 -0.9
57,138 + GFF3550 0.87 -0.6
57,139 - GFF3550 0.87 -0.2
57,139 - GFF3550 0.87 -0.6
57,139 - GFF3550 0.87 +0.3
57,139 - GFF3550 0.87 +0.2
57,139 - GFF3550 0.87 +0.0
57,139 - GFF3550 0.87 +0.3
57,139 - GFF3550 0.87 -0.5
57,139 - GFF3550 0.87 -0.2
57,139 - GFF3550 0.87 +0.3
57,319 - +0.5
57,390 + -0.9
57,390 + -0.1
57,391 - -0.1
57,391 - -0.1
57,455 + GFF3551 0.11 +0.1
57,455 + GFF3551 0.11 -0.2
57,455 + GFF3551 0.11 +0.4
57,455 + GFF3551 0.11 +0.1
57,455 + GFF3551 0.11 -0.1
57,455 + GFF3551 0.11 -0.1
57,455 + GFF3551 0.11 +0.7
57,455 + GFF3551 0.11 -0.3
57,456 - GFF3551 0.11 -0.1
57,503 + GFF3551 0.16 -0.1
57,503 + GFF3551 0.16 -0.3
57,503 + GFF3551 0.16 +0.3
57,503 + GFF3551 0.16 -0.8
57,504 - GFF3551 0.16 +0.3
57,504 - GFF3551 0.16 -0.5
57,504 - GFF3551 0.16 +0.7
57,504 - GFF3551 0.16 -1.0
57,504 - GFF3551 0.16 +0.0
57,504 - GFF3551 0.16 +0.7
57,504 - GFF3551 0.16 +0.3
57,504 - GFF3551 0.16 +0.6
57,504 - GFF3551 0.16 +0.1
57,527 + GFF3551 0.18 -0.5
57,572 + GFF3551 0.22 +0.1
57,572 + GFF3551 0.22 -0.4
57,573 - GFF3551 0.22 -0.4
57,573 - GFF3551 0.22 -0.8
57,689 + GFF3551 0.33 -0.1
57,701 + GFF3551 0.34 -0.3
58,340 + -0.4
58,340 + +1.0
58,340 + -2.2
58,341 - +0.5
58,341 - +0.1
58,386 - +1.2
58,522 + -0.6
58,522 + +1.7
58,522 + -0.4
58,522 + -1.3
58,522 + +0.1
58,522 + -2.6
58,522 + +1.2
58,522 + +0.7
58,523 - +0.4
58,523 - +0.3
58,523 - -0.9
58,523 - +0.3
58,523 - -0.4
58,523 - -0.7
58,708 + GFF3552 0.15 -1.0
58,732 + GFF3552 0.17 -0.2
58,732 + GFF3552 0.17 -0.4
58,733 - GFF3552 0.17 +0.0
59,017 + GFF3552 0.32 +0.8
59,254 + GFF3552 0.45 -0.3
59,254 + GFF3552 0.45 +0.1
59,254 + GFF3552 0.45 -0.2
59,254 + GFF3552 0.45 +0.1
59,255 - GFF3552 0.45 +0.1
59,255 - GFF3552 0.45 -0.6
59,287 + GFF3552 0.47 +0.7
59,287 + GFF3552 0.47 -0.8
59,287 + GFF3552 0.47 +0.2
59,287 + GFF3552 0.47 -1.2
59,287 + GFF3552 0.47 -1.1
59,287 + GFF3552 0.47 -0.4
59,287 + GFF3552 0.47 +0.2
59,288 - GFF3552 0.47 -0.5
59,288 - GFF3552 0.47 -0.3
59,288 - GFF3552 0.47 +0.0
59,288 - GFF3552 0.47 -0.8
59,288 - GFF3552 0.47 +0.8
59,288 - GFF3552 0.47 +0.0
59,288 - GFF3552 0.47 +0.5
59,288 - GFF3552 0.47 +0.4
59,288 - GFF3552 0.47 -0.6

Or see this region's nucleotide sequence