Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3437 and GFF3438 are separated by 149 nucleotides GFF3438 and GFF3439 are separated by 7 nucleotides
GFF3437 - putative membrane protein, at 259,560 to 260,903
GFF3437
GFF3438 - Amidohydrolase family protein, at 261,053 to 262,222
GFF3438
GFF3439 - L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17), at 262,230 to 263,612
GFF3439
Position (kb) 261
262
263 Strain fitness (log2 ratio) -1
0
1 at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.097 kb on + strand, within GFF3437 at 260.097 kb on + strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.328 kb on + strand, within GFF3437 at 260.329 kb on - strand, within GFF3437 at 260.329 kb on - strand, within GFF3437 at 260.370 kb on + strand, within GFF3437 at 260.547 kb on + strand, within GFF3437 at 260.547 kb on + strand, within GFF3437 at 260.547 kb on + strand, within GFF3437 at 260.547 kb on + strand, within GFF3437 at 260.547 kb on + strand, within GFF3437 at 260.548 kb on - strand, within GFF3437 at 260.548 kb on - strand, within GFF3437 at 260.548 kb on - strand, within GFF3437 at 260.548 kb on - strand, within GFF3437 at 260.548 kb on - strand, within GFF3437 at 260.869 kb on + strand at 260.870 kb on - strand at 261.057 kb on - strand at 261.057 kb on - strand at 261.057 kb on - strand at 261.466 kb on - strand, within GFF3438 at 261.778 kb on + strand, within GFF3438 at 262.085 kb on + strand, within GFF3438 at 262.085 kb on + strand, within GFF3438 at 262.086 kb on - strand, within GFF3438 at 262.139 kb on + strand at 262.139 kb on + strand at 262.142 kb on + strand at 262.143 kb on - strand at 262.181 kb on + strand at 262.251 kb on + strand at 262.251 kb on + strand at 262.659 kb on + strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.143 kb on - strand, within GFF3439 at 263.143 kb on - strand, within GFF3439 at 263.145 kb on + strand, within GFF3439 at 263.146 kb on - strand, within GFF3439
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 260,055 + GFF3437 0.37 -0.4 260,055 + GFF3437 0.37 -0.1 260,055 + GFF3437 0.37 +1.3 260,055 + GFF3437 0.37 -0.1 260,056 - GFF3437 0.37 -0.0 260,056 - GFF3437 0.37 +0.2 260,056 - GFF3437 0.37 +0.4 260,097 + GFF3437 0.40 -0.8 260,097 + GFF3437 0.40 +0.2 260,098 - GFF3437 0.40 +0.5 260,098 - GFF3437 0.40 -0.5 260,098 - GFF3437 0.40 -0.4 260,098 - GFF3437 0.40 -0.7 260,098 - GFF3437 0.40 +0.4 260,328 + GFF3437 0.57 +0.9 260,329 - GFF3437 0.57 -0.5 260,329 - GFF3437 0.57 -0.5 260,370 + GFF3437 0.60 -0.2 260,547 + GFF3437 0.73 -0.7 260,547 + GFF3437 0.73 +0.4 260,547 + GFF3437 0.73 +0.7 260,547 + GFF3437 0.73 -0.6 260,547 + GFF3437 0.73 -0.2 260,548 - GFF3437 0.74 -0.2 260,548 - GFF3437 0.74 +0.8 260,548 - GFF3437 0.74 -0.1 260,548 - GFF3437 0.74 +0.5 260,548 - GFF3437 0.74 +0.6 260,869 + +0.1 260,870 - +0.7 261,057 - -0.6 261,057 - -0.1 261,057 - -0.3 261,466 - GFF3438 0.35 +0.7 261,778 + GFF3438 0.62 +0.1 262,085 + GFF3438 0.88 +0.7 262,085 + GFF3438 0.88 +1.0 262,086 - GFF3438 0.88 +1.4 262,139 + +0.0 262,139 + +0.2 262,142 + -0.5 262,143 - +0.0 262,181 + +0.3 262,251 + -0.1 262,251 + +0.3 262,659 + GFF3439 0.31 -0.3 262,660 - GFF3439 0.31 +0.1 262,660 - GFF3439 0.31 -0.5 262,660 - GFF3439 0.31 +0.7 263,142 + GFF3439 0.66 -0.2 263,142 + GFF3439 0.66 -0.1 263,142 + GFF3439 0.66 +0.1 263,143 - GFF3439 0.66 -1.3 263,143 - GFF3439 0.66 -0.2 263,145 + GFF3439 0.66 +0.1 263,146 - GFF3439 0.66 +0.8
Or see this region's nucleotide sequence