Strain Fitness in Variovorax sp. SCN45 around GFF3259

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3258 and GFF3259 overlap by 29 nucleotidesGFF3259 and GFF3260 overlap by 4 nucleotides GFF3258 - hypothetical protein, at 76,364 to 79,288 GFF3258 GFF3259 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23), at 79,260 to 80,120 GFF3259 GFF3260 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 80,117 to 81,628 GFF3260 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1at 78.423 kb on + strand, within GFF3258at 78.423 kb on + strand, within GFF3258at 78.423 kb on + strand, within GFF3258at 78.423 kb on + strand, within GFF3258at 78.423 kb on + strand, within GFF3258at 78.423 kb on + strand, within GFF3258at 78.423 kb on + strand, within GFF3258at 78.423 kb on + strand, within GFF3258at 78.424 kb on - strand, within GFF3258at 78.424 kb on - strand, within GFF3258at 78.424 kb on - strand, within GFF3258at 78.424 kb on - strand, within GFF3258at 78.424 kb on - strand, within GFF3258at 78.712 kb on + strand, within GFF3258at 78.712 kb on + strand, within GFF3258at 78.712 kb on + strand, within GFF3258at 78.713 kb on - strand, within GFF3258at 78.713 kb on - strand, within GFF3258at 78.990 kb on + strand, within GFF3258at 78.991 kb on - strand, within GFF3258at 79.348 kb on + strand, within GFF3259at 79.348 kb on + strand, within GFF3259at 79.348 kb on + strand, within GFF3259at 79.348 kb on + strand, within GFF3259at 79.349 kb on - strand, within GFF3259at 79.451 kb on - strand, within GFF3259at 79.510 kb on + strand, within GFF3259at 79.510 kb on + strand, within GFF3259at 79.511 kb on - strand, within GFF3259at 79.511 kb on - strand, within GFF3259at 79.570 kb on + strand, within GFF3259at 79.570 kb on + strand, within GFF3259at 79.603 kb on + strand, within GFF3259at 79.603 kb on + strand, within GFF3259at 79.603 kb on + strand, within GFF3259at 79.603 kb on + strand, within GFF3259at 79.603 kb on + strand, within GFF3259at 79.603 kb on + strand, within GFF3259at 79.603 kb on + strand, within GFF3259at 79.604 kb on - strand, within GFF3259at 79.604 kb on - strand, within GFF3259at 79.604 kb on - strand, within GFF3259at 79.604 kb on - strand, within GFF3259at 79.972 kb on + strand, within GFF3259at 79.973 kb on - strand, within GFF3259at 80.209 kb on - strandat 80.226 kb on + strandat 80.343 kb on + strand, within GFF3260at 80.343 kb on + strand, within GFF3260at 80.344 kb on - strand, within GFF3260at 80.469 kb on + strand, within GFF3260at 80.469 kb on + strand, within GFF3260at 80.469 kb on + strand, within GFF3260at 80.469 kb on + strand, within GFF3260at 80.469 kb on + strand, within GFF3260at 80.565 kb on + strand, within GFF3260at 80.565 kb on + strand, within GFF3260at 80.565 kb on + strand, within GFF3260at 80.566 kb on - strand, within GFF3260at 80.566 kb on - strand, within GFF3260at 80.715 kb on + strand, within GFF3260at 80.716 kb on - strand, within GFF3260at 80.716 kb on - strand, within GFF3260at 80.716 kb on - strand, within GFF3260at 80.716 kb on - strand, within GFF3260at 80.716 kb on - strand, within GFF3260at 80.716 kb on - strand, within GFF3260at 80.739 kb on + strand, within GFF3260at 80.739 kb on + strand, within GFF3260at 80.739 kb on + strand, within GFF3260at 80.739 kb on + strand, within GFF3260at 80.739 kb on + strand, within GFF3260at 80.739 kb on + strand, within GFF3260at 80.739 kb on + strand, within GFF3260at 80.740 kb on - strand, within GFF3260at 80.740 kb on - strand, within GFF3260at 80.740 kb on - strand, within GFF3260at 80.740 kb on - strand, within GFF3260at 80.740 kb on - strand, within GFF3260at 80.997 kb on + strand, within GFF3260at 80.997 kb on + strand, within GFF3260at 80.998 kb on - strand, within GFF3260at 80.998 kb on - strand, within GFF3260at 80.998 kb on - strand, within GFF3260at 81.069 kb on + strand, within GFF3260at 81.069 kb on + strand, within GFF3260at 81.084 kb on + strand, within GFF3260at 81.084 kb on + strand, within GFF3260at 81.084 kb on + strand, within GFF3260at 81.084 kb on + strand, within GFF3260at 81.085 kb on - strand, within GFF3260at 81.085 kb on - strand, within GFF3260at 81.085 kb on - strand, within GFF3260

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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78,423 + GFF3258 0.70 +1.4
78,423 + GFF3258 0.70 +0.5
78,423 + GFF3258 0.70 -0.1
78,423 + GFF3258 0.70 -1.1
78,423 + GFF3258 0.70 +0.9
78,423 + GFF3258 0.70 +0.2
78,423 + GFF3258 0.70 +1.0
78,423 + GFF3258 0.70 -0.2
78,424 - GFF3258 0.70 -0.8
78,424 - GFF3258 0.70 -1.2
78,424 - GFF3258 0.70 -0.2
78,424 - GFF3258 0.70 -0.7
78,424 - GFF3258 0.70 -0.1
78,712 + GFF3258 0.80 -0.1
78,712 + GFF3258 0.80 -0.6
78,712 + GFF3258 0.80 -0.8
78,713 - GFF3258 0.80 +0.2
78,713 - GFF3258 0.80 -0.8
78,990 + GFF3258 0.90 -1.2
78,991 - GFF3258 0.90 -0.6
79,348 + GFF3259 0.10 -0.2
79,348 + GFF3259 0.10 -0.3
79,348 + GFF3259 0.10 +0.4
79,348 + GFF3259 0.10 +0.1
79,349 - GFF3259 0.10 -0.2
79,451 - GFF3259 0.22 +0.4
79,510 + GFF3259 0.29 -0.0
79,510 + GFF3259 0.29 -0.2
79,511 - GFF3259 0.29 -0.6
79,511 - GFF3259 0.29 +0.8
79,570 + GFF3259 0.36 -0.1
79,570 + GFF3259 0.36 -0.1
79,603 + GFF3259 0.40 +0.2
79,603 + GFF3259 0.40 -0.2
79,603 + GFF3259 0.40 +0.0
79,603 + GFF3259 0.40 -0.2
79,603 + GFF3259 0.40 -0.1
79,603 + GFF3259 0.40 +0.4
79,603 + GFF3259 0.40 -0.3
79,604 - GFF3259 0.40 +0.2
79,604 - GFF3259 0.40 +0.1
79,604 - GFF3259 0.40 -0.5
79,604 - GFF3259 0.40 -0.1
79,972 + GFF3259 0.83 -0.1
79,973 - GFF3259 0.83 +0.8
80,209 - -0.1
80,226 + -0.3
80,343 + GFF3260 0.15 +1.0
80,343 + GFF3260 0.15 +1.0
80,344 - GFF3260 0.15 -1.8
80,469 + GFF3260 0.23 -0.6
80,469 + GFF3260 0.23 -0.4
80,469 + GFF3260 0.23 -0.5
80,469 + GFF3260 0.23 +0.5
80,469 + GFF3260 0.23 -0.2
80,565 + GFF3260 0.30 -0.2
80,565 + GFF3260 0.30 -1.1
80,565 + GFF3260 0.30 +0.2
80,566 - GFF3260 0.30 -0.1
80,566 - GFF3260 0.30 +0.8
80,715 + GFF3260 0.40 -2.1
80,716 - GFF3260 0.40 +0.2
80,716 - GFF3260 0.40 +0.3
80,716 - GFF3260 0.40 -0.2
80,716 - GFF3260 0.40 -0.2
80,716 - GFF3260 0.40 -0.2
80,716 - GFF3260 0.40 +0.3
80,739 + GFF3260 0.41 -0.6
80,739 + GFF3260 0.41 +1.0
80,739 + GFF3260 0.41 -0.2
80,739 + GFF3260 0.41 -0.2
80,739 + GFF3260 0.41 -0.2
80,739 + GFF3260 0.41 -0.4
80,739 + GFF3260 0.41 -0.4
80,740 - GFF3260 0.41 -2.1
80,740 - GFF3260 0.41 +0.3
80,740 - GFF3260 0.41 -0.4
80,740 - GFF3260 0.41 -0.0
80,740 - GFF3260 0.41 +0.9
80,997 + GFF3260 0.58 -0.5
80,997 + GFF3260 0.58 -0.1
80,998 - GFF3260 0.58 +0.5
80,998 - GFF3260 0.58 -1.6
80,998 - GFF3260 0.58 -1.6
81,069 + GFF3260 0.63 -0.1
81,069 + GFF3260 0.63 +1.2
81,084 + GFF3260 0.64 -0.6
81,084 + GFF3260 0.64 -1.2
81,084 + GFF3260 0.64 +0.2
81,084 + GFF3260 0.64 -1.1
81,085 - GFF3260 0.64 -0.8
81,085 - GFF3260 0.64 -1.2
81,085 - GFF3260 0.64 -1.1

Or see this region's nucleotide sequence