Strain Fitness in Variovorax sp. SCN45 around GFF3122

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3120 and GFF3121 are separated by 258 nucleotidesGFF3121 and GFF3122 are separated by 1 nucleotidesGFF3122 and GFF3123 are separated by 39 nucleotidesGFF3123 and GFF3124 are separated by 232 nucleotidesGFF3124 and GFF3125 are separated by 4 nucleotides GFF3120 - no description, at 548,398 to 549,240 GFF3120 GFF3121 - hypothetical protein, at 549,499 to 549,912 GFF3121 GFF3122 - ATP/GTP-binding protein, at 549,914 to 551,791 GFF3122 GFF3123 - no description, at 551,831 to 552,103 GFF3123 GFF3124 - no description, at 552,336 to 552,674 GFF3124 GFF3125 - no description, at 552,679 to 553,125 GFF3125 Position (kb) 549 550 551 552Strain fitness (log2 ratio) -2 -1 0 1 2at 548.915 kb on + strand, within GFF3120at 548.916 kb on - strand, within GFF3120at 549.042 kb on - strand, within GFF3120at 549.042 kb on - strand, within GFF3120at 549.078 kb on - strand, within GFF3120at 549.083 kb on + strand, within GFF3120at 549.135 kb on + strand, within GFF3120at 549.135 kb on + strand, within GFF3120at 549.136 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.164 kb on + strandat 549.164 kb on + strandat 549.165 kb on - strandat 549.165 kb on - strandat 549.165 kb on - strandat 549.165 kb on - strandat 549.193 kb on + strandat 549.194 kb on + strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.199 kb on - strandat 549.199 kb on - strandat 549.199 kb on - strandat 549.199 kb on - strandat 549.258 kb on + strandat 549.320 kb on + strandat 549.320 kb on + strandat 549.321 kb on - strandat 549.321 kb on - strandat 549.321 kb on - strandat 549.321 kb on - strandat 549.382 kb on + strandat 549.383 kb on - strandat 549.438 kb on + strandat 549.438 kb on + strandat 549.439 kb on - strandat 549.439 kb on - strandat 549.444 kb on + strandat 549.444 kb on + strandat 549.444 kb on + strandat 549.444 kb on + strandat 549.444 kb on + strandat 549.445 kb on - strandat 549.445 kb on - strandat 549.445 kb on - strandat 549.540 kb on - strandat 549.623 kb on + strand, within GFF3121at 549.623 kb on + strand, within GFF3121at 549.624 kb on - strand, within GFF3121at 549.758 kb on - strand, within GFF3121at 549.855 kb on - strand, within GFF3121at 549.923 kb on + strandat 549.995 kb on + strandat 549.995 kb on + strandat 550.061 kb on + strandat 550.062 kb on - strandat 550.062 kb on - strandat 550.062 kb on - strandat 550.062 kb on - strandat 550.074 kb on + strandat 550.074 kb on + strandat 550.209 kb on + strand, within GFF3122at 550.210 kb on - strand, within GFF3122at 550.237 kb on + strand, within GFF3122at 550.237 kb on + strand, within GFF3122at 550.238 kb on - strand, within GFF3122at 550.238 kb on - strand, within GFF3122at 550.262 kb on + strand, within GFF3122at 550.262 kb on + strand, within GFF3122at 550.263 kb on - strand, within GFF3122at 550.263 kb on - strand, within GFF3122at 550.263 kb on - strand, within GFF3122at 550.263 kb on - strand, within GFF3122at 550.302 kb on - strand, within GFF3122at 550.317 kb on - strand, within GFF3122at 550.317 kb on - strand, within GFF3122at 550.317 kb on - strand, within GFF3122at 550.371 kb on + strand, within GFF3122at 550.371 kb on + strand, within GFF3122at 550.372 kb on - strand, within GFF3122at 550.385 kb on + strand, within GFF3122at 550.385 kb on + strand, within GFF3122at 550.393 kb on + strand, within GFF3122at 550.398 kb on - strand, within GFF3122at 550.398 kb on - strand, within GFF3122at 550.431 kb on - strand, within GFF3122at 550.439 kb on + strand, within GFF3122at 550.440 kb on - strand, within GFF3122at 550.440 kb on - strand, within GFF3122at 550.563 kb on + strand, within GFF3122at 550.796 kb on + strand, within GFF3122at 550.796 kb on + strand, within GFF3122at 550.797 kb on - strand, within GFF3122at 550.797 kb on - strand, within GFF3122at 550.869 kb on - strand, within GFF3122at 551.177 kb on + strand, within GFF3122at 551.177 kb on + strand, within GFF3122at 551.177 kb on + strand, within GFF3122at 551.178 kb on - strand, within GFF3122at 551.505 kb on - strand, within GFF3122at 551.505 kb on - strand, within GFF3122at 551.673 kb on - strandat 551.708 kb on + strandat 551.708 kb on + strandat 551.714 kb on + strandat 551.714 kb on + strandat 551.741 kb on + strandat 551.741 kb on + strandat 551.742 kb on - strandat 551.790 kb on - strandat 552.088 kb on + strandat 552.127 kb on - strandat 552.161 kb on + strandat 552.253 kb on + strandat 552.253 kb on + strandat 552.253 kb on + strandat 552.358 kb on - strandat 552.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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548,915 + GFF3120 0.61 -0.3
548,916 - GFF3120 0.61 +0.6
549,042 - GFF3120 0.76 -0.8
549,042 - GFF3120 0.76 -0.4
549,078 - GFF3120 0.81 -0.3
549,083 + GFF3120 0.81 +2.0
549,135 + GFF3120 0.87 -0.5
549,135 + GFF3120 0.87 +0.0
549,136 - GFF3120 0.88 -0.6
549,140 - GFF3120 0.88 -0.8
549,140 - GFF3120 0.88 -0.2
549,140 - GFF3120 0.88 -1.1
549,140 - GFF3120 0.88 -0.3
549,140 - GFF3120 0.88 +1.0
549,140 - GFF3120 0.88 -0.2
549,164 + +0.6
549,164 + -0.9
549,165 - -0.0
549,165 - -1.3
549,165 - -0.3
549,165 - -0.3
549,193 + -1.6
549,194 + -0.4
549,195 - -0.0
549,195 - -0.0
549,195 - +1.0
549,195 - -0.6
549,195 - +0.8
549,195 - +0.7
549,198 + -1.0
549,198 + -1.0
549,198 + -0.4
549,198 + -0.7
549,198 + +1.0
549,198 + +0.4
549,198 + +0.6
549,198 + +0.0
549,199 - -0.2
549,199 - -1.9
549,199 - +0.0
549,199 - -0.8
549,258 + -0.8
549,320 + +0.1
549,320 + -0.6
549,321 - -0.4
549,321 - +0.1
549,321 - +0.1
549,321 - -0.2
549,382 + -0.4
549,383 - -1.0
549,438 + -0.9
549,438 + +0.5
549,439 - -1.6
549,439 - -1.3
549,444 + -1.9
549,444 + -0.1
549,444 + +1.6
549,444 + -0.7
549,444 + -0.4
549,445 - -0.0
549,445 - -0.3
549,445 - -0.4
549,540 - -0.1
549,623 + GFF3121 0.30 -0.2
549,623 + GFF3121 0.30 -0.3
549,624 - GFF3121 0.30 -0.3
549,758 - GFF3121 0.63 -0.7
549,855 - GFF3121 0.86 -0.5
549,923 + -0.5
549,995 + -0.3
549,995 + -0.4
550,061 + -0.4
550,062 - -0.4
550,062 - -0.6
550,062 - -0.5
550,062 - -0.3
550,074 + -0.3
550,074 + -0.6
550,209 + GFF3122 0.16 -0.5
550,210 - GFF3122 0.16 -0.1
550,237 + GFF3122 0.17 +1.6
550,237 + GFF3122 0.17 -0.5
550,238 - GFF3122 0.17 +1.2
550,238 - GFF3122 0.17 +0.6
550,262 + GFF3122 0.19 -0.5
550,262 + GFF3122 0.19 +0.6
550,263 - GFF3122 0.19 -0.3
550,263 - GFF3122 0.19 -2.0
550,263 - GFF3122 0.19 -1.4
550,263 - GFF3122 0.19 -0.8
550,302 - GFF3122 0.21 +0.6
550,317 - GFF3122 0.21 -0.5
550,317 - GFF3122 0.21 -0.1
550,317 - GFF3122 0.21 -0.3
550,371 + GFF3122 0.24 -0.0
550,371 + GFF3122 0.24 +0.1
550,372 - GFF3122 0.24 +1.6
550,385 + GFF3122 0.25 -0.5
550,385 + GFF3122 0.25 +0.1
550,393 + GFF3122 0.26 +0.2
550,398 - GFF3122 0.26 +0.1
550,398 - GFF3122 0.26 +1.3
550,431 - GFF3122 0.28 +0.7
550,439 + GFF3122 0.28 -0.3
550,440 - GFF3122 0.28 +0.3
550,440 - GFF3122 0.28 -0.2
550,563 + GFF3122 0.35 +0.3
550,796 + GFF3122 0.47 -1.0
550,796 + GFF3122 0.47 -0.4
550,797 - GFF3122 0.47 -0.2
550,797 - GFF3122 0.47 -0.7
550,869 - GFF3122 0.51 +0.5
551,177 + GFF3122 0.67 -0.1
551,177 + GFF3122 0.67 -0.8
551,177 + GFF3122 0.67 +0.3
551,178 - GFF3122 0.67 -0.3
551,505 - GFF3122 0.85 -0.4
551,505 - GFF3122 0.85 +0.3
551,673 - -1.3
551,708 + +1.0
551,708 + -1.0
551,714 + -1.3
551,714 + -0.0
551,741 + +0.6
551,741 + -0.3
551,742 - +0.4
551,790 - -0.4
552,088 + -0.5
552,127 - +0.5
552,161 + -0.8
552,253 + -0.2
552,253 + -0.4
552,253 + -1.0
552,358 - +1.1
552,699 - +0.1

Or see this region's nucleotide sequence