Strain Fitness in Variovorax sp. SCN45 around GFF2988

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2986 and GFF2987 are separated by 30 nucleotidesGFF2987 and GFF2988 are separated by 177 nucleotidesGFF2988 and GFF2989 are separated by 8 nucleotides GFF2986 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 416,577 to 417,674 GFF2986 GFF2987 - CBS domain protein, at 417,705 to 418,157 GFF2987 GFF2988 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 418,335 to 419,639 GFF2988 GFF2989 - hypothetical protein, at 419,648 to 421,054 GFF2989 Position (kb) 418 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 417.417 kb on + strand, within GFF2986at 417.418 kb on - strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.477 kb on + strand, within GFF2986at 417.478 kb on - strand, within GFF2986at 417.478 kb on - strand, within GFF2986at 417.579 kb on + strandat 417.580 kb on - strandat 417.580 kb on - strandat 417.580 kb on - strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.746 kb on - strandat 417.746 kb on - strandat 417.746 kb on - strandat 417.746 kb on - strandat 417.805 kb on + strand, within GFF2987at 417.805 kb on + strand, within GFF2987at 417.805 kb on + strand, within GFF2987at 417.805 kb on + strand, within GFF2987at 417.805 kb on + strand, within GFF2987at 417.806 kb on - strand, within GFF2987at 417.806 kb on - strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 418.201 kb on + strandat 418.201 kb on + strandat 418.201 kb on + strandat 418.201 kb on + strandat 418.201 kb on + strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.228 kb on + strandat 418.230 kb on + strandat 418.230 kb on + strandat 418.230 kb on + strandat 418.231 kb on - strandat 418.231 kb on - strandat 418.288 kb on + strandat 418.288 kb on + strandat 418.289 kb on - strandat 418.506 kb on + strand, within GFF2988at 418.507 kb on - strand, within GFF2988at 418.561 kb on + strand, within GFF2988at 418.671 kb on + strand, within GFF2988at 418.698 kb on + strand, within GFF2988at 418.698 kb on + strand, within GFF2988at 418.698 kb on + strand, within GFF2988at 418.698 kb on + strand, within GFF2988at 418.699 kb on - strand, within GFF2988at 418.908 kb on + strand, within GFF2988at 418.908 kb on + strand, within GFF2988at 418.908 kb on + strand, within GFF2988at 418.908 kb on + strand, within GFF2988at 418.908 kb on + strand, within GFF2988at 418.908 kb on + strand, within GFF2988at 418.909 kb on - strand, within GFF2988at 418.947 kb on + strand, within GFF2988at 418.948 kb on - strand, within GFF2988at 418.948 kb on - strand, within GFF2988at 419.064 kb on + strand, within GFF2988at 419.064 kb on + strand, within GFF2988at 419.065 kb on - strand, within GFF2988at 419.668 kb on - strandat 419.753 kb on + strandat 419.754 kb on - strandat 419.754 kb on - strandat 419.966 kb on + strand, within GFF2989at 419.967 kb on - strand, within GFF2989at 420.029 kb on + strand, within GFF2989at 420.029 kb on + strand, within GFF2989at 420.029 kb on + strand, within GFF2989at 420.030 kb on - strand, within GFF2989at 420.134 kb on + strand, within GFF2989at 420.134 kb on + strand, within GFF2989at 420.201 kb on + strand, within GFF2989at 420.230 kb on + strand, within GFF2989at 420.231 kb on - strand, within GFF2989at 420.589 kb on - strand, within GFF2989

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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417,417 + GFF2986 0.77 +1.0
417,418 - GFF2986 0.77 +0.2
417,456 + GFF2986 0.80 -0.4
417,456 + GFF2986 0.80 +0.8
417,456 + GFF2986 0.80 +0.1
417,457 - GFF2986 0.80 +0.1
417,457 - GFF2986 0.80 -0.3
417,457 - GFF2986 0.80 +0.2
417,457 - GFF2986 0.80 -1.4
417,457 - GFF2986 0.80 -1.9
417,477 + GFF2986 0.82 -1.1
417,478 - GFF2986 0.82 -0.5
417,478 - GFF2986 0.82 -1.3
417,579 + -0.4
417,580 - +0.5
417,580 - -0.2
417,580 - -0.7
417,745 + -0.1
417,745 + -0.0
417,745 + -0.3
417,745 + -0.1
417,745 + +0.3
417,745 + -0.4
417,745 + +0.4
417,745 + -0.5
417,746 - -0.1
417,746 - -1.5
417,746 - -1.5
417,746 - -0.5
417,805 + GFF2987 0.22 -0.8
417,805 + GFF2987 0.22 -0.0
417,805 + GFF2987 0.22 +2.0
417,805 + GFF2987 0.22 -0.9
417,805 + GFF2987 0.22 -0.0
417,806 - GFF2987 0.22 +0.1
417,806 - GFF2987 0.22 -0.0
417,853 + GFF2987 0.33 -0.3
417,853 + GFF2987 0.33 -0.0
417,853 + GFF2987 0.33 +0.3
417,853 + GFF2987 0.33 -0.0
417,853 + GFF2987 0.33 -0.8
417,853 + GFF2987 0.33 -0.4
417,853 + GFF2987 0.33 +0.2
417,854 - GFF2987 0.33 -1.0
417,854 - GFF2987 0.33 -2.8
417,854 - GFF2987 0.33 -1.3
417,854 - GFF2987 0.33 +1.1
417,854 - GFF2987 0.33 +0.7
418,201 + -0.5
418,201 + -0.1
418,201 + -0.0
418,201 + -0.0
418,201 + -0.2
418,202 - -0.6
418,202 - +0.3
418,202 - -1.6
418,202 - -0.0
418,202 - -0.9
418,202 - -1.0
418,202 - -0.3
418,202 - -0.1
418,202 - -0.8
418,228 + -2.1
418,230 + +1.3
418,230 + -1.2
418,230 + -0.5
418,231 - -1.0
418,231 - +1.0
418,288 + +0.0
418,288 + -1.0
418,289 - -0.6
418,506 + GFF2988 0.13 +0.5
418,507 - GFF2988 0.13 -1.5
418,561 + GFF2988 0.17 -0.4
418,671 + GFF2988 0.26 -0.8
418,698 + GFF2988 0.28 +0.3
418,698 + GFF2988 0.28 -0.3
418,698 + GFF2988 0.28 -0.8
418,698 + GFF2988 0.28 -1.1
418,699 - GFF2988 0.28 +1.5
418,908 + GFF2988 0.44 -0.9
418,908 + GFF2988 0.44 -0.1
418,908 + GFF2988 0.44 -1.8
418,908 + GFF2988 0.44 +0.5
418,908 + GFF2988 0.44 -0.6
418,908 + GFF2988 0.44 +0.0
418,909 - GFF2988 0.44 -0.1
418,947 + GFF2988 0.47 -0.9
418,948 - GFF2988 0.47 -1.5
418,948 - GFF2988 0.47 -0.6
419,064 + GFF2988 0.56 +0.8
419,064 + GFF2988 0.56 -0.7
419,065 - GFF2988 0.56 -0.5
419,668 - -0.2
419,753 + +0.5
419,754 - -0.0
419,754 - +0.7
419,966 + GFF2989 0.23 -0.9
419,967 - GFF2989 0.23 +2.0
420,029 + GFF2989 0.27 -1.3
420,029 + GFF2989 0.27 +0.8
420,029 + GFF2989 0.27 -0.6
420,030 - GFF2989 0.27 +0.2
420,134 + GFF2989 0.35 +0.9
420,134 + GFF2989 0.35 +0.5
420,201 + GFF2989 0.39 -0.5
420,230 + GFF2989 0.41 +0.1
420,231 - GFF2989 0.41 -0.8
420,589 - GFF2989 0.67 -0.4

Or see this region's nucleotide sequence