Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2893 and GFF2894 are separated by 41 nucleotides GFF2894 and GFF2895 overlap by 4 nucleotides GFF2895 and GFF2896 are separated by 146 nucleotides
GFF2893 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 318,841 to 319,827
GFF2893
GFF2894 - Transcriptional regulator, GntR family, at 319,869 to 320,651
GFF2894
GFF2895 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 320,648 to 321,766
GFF2895
GFF2896 - Methionine synthase II (cobalamin-independent), at 321,913 to 323,034
GFF2896
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.652 kb on + strand, within GFF2893 at 319.652 kb on + strand, within GFF2893 at 319.653 kb on - strand, within GFF2893 at 319.718 kb on + strand, within GFF2893 at 320.216 kb on - strand, within GFF2894 at 320.216 kb on - strand, within GFF2894 at 320.410 kb on + strand, within GFF2894 at 320.411 kb on - strand, within GFF2894 at 320.781 kb on + strand, within GFF2895 at 320.781 kb on + strand, within GFF2895 at 320.781 kb on + strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.931 kb on + strand, within GFF2895 at 320.931 kb on + strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.976 kb on + strand, within GFF2895 at 321.531 kb on + strand, within GFF2895 at 321.532 kb on - strand, within GFF2895 at 321.532 kb on - strand, within GFF2895 at 321.532 kb on - strand, within GFF2895 at 321.652 kb on - strand, within GFF2895 at 321.652 kb on - strand, within GFF2895 at 321.726 kb on + strand at 321.726 kb on + strand at 321.726 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.818 kb on + strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.819 kb on - strand at 321.838 kb on - strand at 321.843 kb on + strand at 321.871 kb on + strand at 321.872 kb on - strand at 321.976 kb on + strand at 321.976 kb on + strand at 321.976 kb on + strand at 321.976 kb on + strand at 321.976 kb on + strand at 321.977 kb on - strand at 321.977 kb on - strand at 321.977 kb on - strand at 321.977 kb on - strand at 321.977 kb on - strand at 322.126 kb on + strand, within GFF2896 at 322.126 kb on + strand, within GFF2896 at 322.126 kb on + strand, within GFF2896 at 322.126 kb on + strand, within GFF2896 at 322.126 kb on + strand, within GFF2896 at 322.127 kb on - strand, within GFF2896 at 322.127 kb on - strand, within GFF2896 at 322.127 kb on - strand, within GFF2896 at 322.285 kb on + strand, within GFF2896 at 322.285 kb on + strand, within GFF2896 at 322.286 kb on - strand, within GFF2896 at 322.415 kb on - strand, within GFF2896 at 322.435 kb on + strand, within GFF2896 at 322.435 kb on + strand, within GFF2896 at 322.435 kb on + strand, within GFF2896 at 322.435 kb on + strand, within GFF2896 at 322.435 kb on + strand, within GFF2896 at 322.436 kb on - strand, within GFF2896 at 322.477 kb on + strand, within GFF2896 at 322.477 kb on + strand, within GFF2896 at 322.477 kb on + strand, within GFF2896 at 322.478 kb on - strand, within GFF2896 at 322.478 kb on - strand, within GFF2896 at 322.478 kb on - strand, within GFF2896 at 322.478 kb on - strand, within GFF2896 at 322.478 kb on - strand, within GFF2896 at 322.478 kb on - strand, within GFF2896 at 322.478 kb on - strand, within GFF2896 at 322.507 kb on + strand, within GFF2896 at 322.507 kb on + strand, within GFF2896 at 322.507 kb on + strand, within GFF2896 at 322.507 kb on + strand, within GFF2896 at 322.508 kb on - strand, within GFF2896 at 322.508 kb on - strand, within GFF2896 at 322.508 kb on - strand, within GFF2896 at 322.508 kb on - strand, within GFF2896 at 322.508 kb on - strand, within GFF2896 at 322.508 kb on - strand, within GFF2896 at 322.687 kb on + strand, within GFF2896 at 322.687 kb on + strand, within GFF2896 at 322.687 kb on + strand, within GFF2896 at 322.687 kb on + strand, within GFF2896 at 322.688 kb on - strand, within GFF2896 at 322.688 kb on - strand, within GFF2896 at 322.688 kb on - strand, within GFF2896 at 322.688 kb on - strand, within GFF2896 at 322.688 kb on - strand, within GFF2896 at 322.688 kb on - strand, within GFF2896 at 322.735 kb on + strand, within GFF2896 at 322.736 kb on - strand, within GFF2896 at 322.736 kb on - strand, within GFF2896 at 322.736 kb on - strand, within GFF2896 at 322.747 kb on + strand, within GFF2896 at 322.748 kb on - strand, within GFF2896 at 322.748 kb on - strand, within GFF2896
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 319,652 + GFF2893 0.82 -0.4 319,652 + GFF2893 0.82 -0.8 319,653 - GFF2893 0.82 +0.1 319,718 + GFF2893 0.89 -1.3 320,216 - GFF2894 0.44 -0.2 320,216 - GFF2894 0.44 -0.7 320,410 + GFF2894 0.69 -1.2 320,411 - GFF2894 0.69 -0.4 320,781 + GFF2895 0.12 -0.2 320,781 + GFF2895 0.12 -0.6 320,781 + GFF2895 0.12 +0.7 320,782 - GFF2895 0.12 +0.6 320,782 - GFF2895 0.12 -0.6 320,782 - GFF2895 0.12 -0.4 320,907 + GFF2895 0.23 -0.2 320,907 + GFF2895 0.23 +0.8 320,907 + GFF2895 0.23 -0.4 320,907 + GFF2895 0.23 -0.9 320,907 + GFF2895 0.23 +0.5 320,908 - GFF2895 0.23 -1.5 320,908 - GFF2895 0.23 -0.3 320,908 - GFF2895 0.23 -0.5 320,908 - GFF2895 0.23 +0.5 320,931 + GFF2895 0.25 +0.4 320,931 + GFF2895 0.25 -0.0 320,932 - GFF2895 0.25 -0.4 320,932 - GFF2895 0.25 -0.6 320,932 - GFF2895 0.25 -0.2 320,932 - GFF2895 0.25 +2.3 320,976 + GFF2895 0.29 -0.2 321,531 + GFF2895 0.79 -0.2 321,532 - GFF2895 0.79 -0.5 321,532 - GFF2895 0.79 +1.5 321,532 - GFF2895 0.79 -0.6 321,652 - GFF2895 0.90 -0.5 321,652 - GFF2895 0.90 -1.9 321,726 + -1.0 321,726 + +0.2 321,726 + -0.5 321,818 + -0.4 321,818 + +0.2 321,818 + -0.0 321,818 + -0.1 321,818 + -0.6 321,818 + -1.0 321,818 + -1.3 321,818 + +0.5 321,818 + -1.2 321,818 + -0.0 321,818 + -0.7 321,818 + -0.1 321,818 + -0.1 321,818 + +0.1 321,818 + -1.3 321,818 + +0.5 321,818 + +0.3 321,818 + +0.5 321,818 + -0.6 321,818 + +1.2 321,818 + -0.3 321,818 + +0.5 321,818 + -1.2 321,818 + +0.1 321,818 + +2.3 321,818 + +0.3 321,818 + -0.3 321,818 + +0.1 321,818 + -0.3 321,818 + +1.0 321,818 + -0.5 321,818 + -1.3 321,818 + -0.2 321,818 + -1.1 321,818 + -1.0 321,818 + +0.2 321,818 + +0.2 321,818 + -0.6 321,818 + +1.1 321,818 + +0.0 321,818 + -0.0 321,818 + -0.7 321,818 + -0.0 321,818 + -0.5 321,818 + -0.2 321,818 + -0.2 321,818 + +1.3 321,818 + -1.0 321,818 + -0.1 321,818 + +0.4 321,818 + +0.0 321,818 + -0.0 321,818 + +2.1 321,818 + -0.8 321,819 - -0.0 321,819 - +0.5 321,819 - -0.2 321,819 - -0.2 321,819 - -0.3 321,819 - +0.3 321,819 - -0.8 321,819 - -1.6 321,819 - +0.7 321,819 - -0.6 321,819 - +0.1 321,819 - -0.7 321,819 - +0.4 321,819 - +0.1 321,819 - +0.9 321,819 - +0.1 321,819 - +1.1 321,819 - -1.9 321,819 - -0.2 321,819 - -0.4 321,819 - -0.0 321,819 - -0.3 321,819 - +0.5 321,819 - -0.4 321,819 - -0.6 321,819 - -0.7 321,819 - -0.7 321,819 - -0.2 321,819 - -0.6 321,819 - +0.7 321,819 - +0.5 321,819 - +0.5 321,819 - +0.1 321,819 - -0.9 321,819 - -0.9 321,819 - +0.1 321,819 - +0.2 321,819 - -0.9 321,819 - -0.0 321,819 - -0.4 321,819 - -1.9 321,819 - -1.5 321,819 - -0.5 321,819 - -0.5 321,819 - -0.6 321,838 - -0.3 321,843 + +0.6 321,871 + -0.4 321,872 - +0.2 321,976 + +1.2 321,976 + +1.1 321,976 + +0.6 321,976 + -0.0 321,976 + -1.7 321,977 - -0.7 321,977 - -1.0 321,977 - +0.1 321,977 - -0.4 321,977 - -0.2 322,126 + GFF2896 0.19 +1.0 322,126 + GFF2896 0.19 -0.3 322,126 + GFF2896 0.19 +0.7 322,126 + GFF2896 0.19 +0.7 322,126 + GFF2896 0.19 -0.9 322,127 - GFF2896 0.19 -0.7 322,127 - GFF2896 0.19 -0.2 322,127 - GFF2896 0.19 +0.4 322,285 + GFF2896 0.33 -2.0 322,285 + GFF2896 0.33 +0.8 322,286 - GFF2896 0.33 +0.2 322,415 - GFF2896 0.45 +0.0 322,435 + GFF2896 0.47 +0.5 322,435 + GFF2896 0.47 -0.4 322,435 + GFF2896 0.47 +0.3 322,435 + GFF2896 0.47 -0.8 322,435 + GFF2896 0.47 -0.3 322,436 - GFF2896 0.47 -0.7 322,477 + GFF2896 0.50 -0.2 322,477 + GFF2896 0.50 -0.5 322,477 + GFF2896 0.50 -0.6 322,478 - GFF2896 0.50 +0.4 322,478 - GFF2896 0.50 +0.1 322,478 - GFF2896 0.50 -0.9 322,478 - GFF2896 0.50 +0.5 322,478 - GFF2896 0.50 +0.0 322,478 - GFF2896 0.50 +0.8 322,478 - GFF2896 0.50 +0.5 322,507 + GFF2896 0.53 -1.3 322,507 + GFF2896 0.53 -0.1 322,507 + GFF2896 0.53 +0.1 322,507 + GFF2896 0.53 +0.3 322,508 - GFF2896 0.53 +1.0 322,508 - GFF2896 0.53 -0.4 322,508 - GFF2896 0.53 +0.1 322,508 - GFF2896 0.53 -0.0 322,508 - GFF2896 0.53 -1.0 322,508 - GFF2896 0.53 -0.8 322,687 + GFF2896 0.69 +0.5 322,687 + GFF2896 0.69 -0.4 322,687 + GFF2896 0.69 -0.9 322,687 + GFF2896 0.69 -0.7 322,688 - GFF2896 0.69 -1.0 322,688 - GFF2896 0.69 -1.1 322,688 - GFF2896 0.69 -2.0 322,688 - GFF2896 0.69 -0.1 322,688 - GFF2896 0.69 -0.8 322,688 - GFF2896 0.69 -1.0 322,735 + GFF2896 0.73 -0.6 322,736 - GFF2896 0.73 +0.7 322,736 - GFF2896 0.73 +0.1 322,736 - GFF2896 0.73 +0.2 322,747 + GFF2896 0.74 -1.3 322,748 - GFF2896 0.74 +0.4 322,748 - GFF2896 0.74 +0.4
Or see this region's nucleotide sequence