Strain Fitness in Variovorax sp. SCN45 around GFF2893

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2892 and GFF2893 are separated by 166 nucleotidesGFF2893 and GFF2894 are separated by 41 nucleotidesGFF2894 and GFF2895 overlap by 4 nucleotides GFF2892 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 317,502 to 318,674 GFF2892 GFF2893 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 318,841 to 319,827 GFF2893 GFF2894 - Transcriptional regulator, GntR family, at 319,869 to 320,651 GFF2894 GFF2895 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 320,648 to 321,766 GFF2895 Position (kb) 318 319 320Strain fitness (log2 ratio) -2 -1 0 1at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 318.164 kb on - strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.712 kb on - strandat 318.755 kb on - strandat 318.857 kb on + strandat 319.244 kb on + strand, within GFF2893at 319.244 kb on + strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.355 kb on + strand, within GFF2893at 319.386 kb on - strand, within GFF2893at 319.386 kb on - strand, within GFF2893at 319.386 kb on - strand, within GFF2893at 319.652 kb on + strand, within GFF2893at 319.652 kb on + strand, within GFF2893at 319.653 kb on - strand, within GFF2893at 319.718 kb on + strand, within GFF2893at 320.216 kb on - strand, within GFF2894at 320.216 kb on - strand, within GFF2894at 320.410 kb on + strand, within GFF2894at 320.411 kb on - strand, within GFF2894at 320.781 kb on + strand, within GFF2895at 320.781 kb on + strand, within GFF2895at 320.781 kb on + strand, within GFF2895at 320.782 kb on - strand, within GFF2895at 320.782 kb on - strand, within GFF2895at 320.782 kb on - strand, within GFF2895

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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317,848 + GFF2892 0.29 +0.7
317,848 + GFF2892 0.29 +0.2
317,848 + GFF2892 0.29 +0.2
317,848 + GFF2892 0.29 +0.3
317,848 + GFF2892 0.29 -0.0
317,848 + GFF2892 0.29 +0.0
317,848 + GFF2892 0.29 -0.0
317,849 - GFF2892 0.30 -0.3
317,849 - GFF2892 0.30 -1.0
317,849 - GFF2892 0.30 -2.3
318,164 - GFF2892 0.56 -1.8
318,265 + GFF2892 0.65 +0.5
318,265 + GFF2892 0.65 -0.3
318,265 + GFF2892 0.65 -0.6
318,265 + GFF2892 0.65 +1.5
318,265 + GFF2892 0.65 -0.2
318,266 - GFF2892 0.65 -0.4
318,266 - GFF2892 0.65 -0.1
318,266 - GFF2892 0.65 +0.1
318,266 - GFF2892 0.65 +0.8
318,511 + GFF2892 0.86 -0.1
318,511 + GFF2892 0.86 +0.5
318,511 + GFF2892 0.86 -0.2
318,511 + GFF2892 0.86 -0.4
318,511 + GFF2892 0.86 -1.0
318,511 + GFF2892 0.86 -0.1
318,511 + GFF2892 0.86 +0.1
318,511 + GFF2892 0.86 -0.3
318,511 + GFF2892 0.86 +0.5
318,511 + GFF2892 0.86 -1.3
318,512 - GFF2892 0.86 -0.5
318,512 - GFF2892 0.86 +0.9
318,512 - GFF2892 0.86 -0.7
318,512 - GFF2892 0.86 -0.8
318,512 - GFF2892 0.86 -1.8
318,512 - GFF2892 0.86 -1.5
318,512 - GFF2892 0.86 -0.9
318,512 - GFF2892 0.86 -0.2
318,512 - GFF2892 0.86 -1.3
318,712 - +0.8
318,755 - -1.4
318,857 + +0.1
319,244 + GFF2893 0.41 -1.9
319,244 + GFF2893 0.41 +0.4
319,245 - GFF2893 0.41 -0.8
319,245 - GFF2893 0.41 -0.5
319,245 - GFF2893 0.41 -0.6
319,245 - GFF2893 0.41 -1.4
319,245 - GFF2893 0.41 +0.2
319,355 + GFF2893 0.52 -1.4
319,386 - GFF2893 0.55 +1.5
319,386 - GFF2893 0.55 +0.5
319,386 - GFF2893 0.55 -0.2
319,652 + GFF2893 0.82 -0.4
319,652 + GFF2893 0.82 -0.8
319,653 - GFF2893 0.82 +0.1
319,718 + GFF2893 0.89 -1.3
320,216 - GFF2894 0.44 -0.2
320,216 - GFF2894 0.44 -0.7
320,410 + GFF2894 0.69 -1.2
320,411 - GFF2894 0.69 -0.4
320,781 + GFF2895 0.12 -0.2
320,781 + GFF2895 0.12 -0.6
320,781 + GFF2895 0.12 +0.7
320,782 - GFF2895 0.12 +0.6
320,782 - GFF2895 0.12 -0.6
320,782 - GFF2895 0.12 -0.4

Or see this region's nucleotide sequence