Strain Fitness in Variovorax sp. SCN45 around GFF2892

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2891 and GFF2892 are separated by 142 nucleotidesGFF2892 and GFF2893 are separated by 166 nucleotides GFF2891 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 316,487 to 317,359 GFF2891 GFF2892 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 317,502 to 318,674 GFF2892 GFF2893 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 318,841 to 319,827 GFF2893 Position (kb) 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 316.555 kb on - strandat 316.555 kb on - strandat 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.684 kb on - strand, within GFF2891at 316.684 kb on - strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.935 kb on + strand, within GFF2891at 317.034 kb on + strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.119 kb on - strand, within GFF2891at 317.119 kb on - strand, within GFF2891at 317.226 kb on + strand, within GFF2891at 317.226 kb on + strand, within GFF2891at 317.227 kb on - strand, within GFF2891at 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.367 kb on - strandat 317.367 kb on - strandat 317.504 kb on - strandat 317.557 kb on + strandat 317.557 kb on + strandat 317.557 kb on + strandat 317.557 kb on + strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.576 kb on - strandat 317.593 kb on + strandat 317.593 kb on + strandat 317.593 kb on + strandat 317.594 kb on - strandat 317.594 kb on - strandat 317.594 kb on - strandat 317.728 kb on + strand, within GFF2892at 317.729 kb on - strand, within GFF2892at 317.749 kb on + strand, within GFF2892at 317.750 kb on - strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 318.164 kb on - strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.511 kb on + strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.512 kb on - strand, within GFF2892at 318.712 kb on - strandat 318.755 kb on - strandat 318.857 kb on + strandat 319.244 kb on + strand, within GFF2893at 319.244 kb on + strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.245 kb on - strand, within GFF2893at 319.355 kb on + strand, within GFF2893at 319.386 kb on - strand, within GFF2893at 319.386 kb on - strand, within GFF2893at 319.386 kb on - strand, within GFF2893at 319.652 kb on + strand, within GFF2893at 319.652 kb on + strand, within GFF2893at 319.653 kb on - strand, within GFF2893

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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316,555 - +0.2
316,555 - +0.5
316,587 + GFF2891 0.11 +0.1
316,587 + GFF2891 0.11 +0.9
316,587 + GFF2891 0.11 -0.3
316,587 + GFF2891 0.11 -1.4
316,588 - GFF2891 0.12 -0.5
316,588 - GFF2891 0.12 -0.2
316,588 - GFF2891 0.12 +0.3
316,588 - GFF2891 0.12 -1.9
316,588 - GFF2891 0.12 -2.5
316,588 - GFF2891 0.12 +0.7
316,683 + GFF2891 0.22 -0.0
316,683 + GFF2891 0.22 -1.6
316,683 + GFF2891 0.22 +0.7
316,683 + GFF2891 0.22 +0.3
316,684 - GFF2891 0.23 +0.2
316,684 - GFF2891 0.23 -0.0
316,692 + GFF2891 0.23 -0.6
316,692 + GFF2891 0.23 -0.2
316,692 + GFF2891 0.23 +0.4
316,692 + GFF2891 0.23 -0.2
316,692 + GFF2891 0.23 -0.7
316,692 + GFF2891 0.23 +0.0
316,693 - GFF2891 0.24 -0.6
316,693 - GFF2891 0.24 -0.7
316,693 - GFF2891 0.24 -0.2
316,693 - GFF2891 0.24 -0.8
316,693 - GFF2891 0.24 -0.4
316,693 - GFF2891 0.24 +0.5
316,935 + GFF2891 0.51 -0.1
317,034 + GFF2891 0.63 +1.5
317,035 - GFF2891 0.63 -0.3
317,035 - GFF2891 0.63 -0.6
317,035 - GFF2891 0.63 -0.1
317,107 - GFF2891 0.71 -0.7
317,107 - GFF2891 0.71 -0.4
317,107 - GFF2891 0.71 -0.0
317,107 - GFF2891 0.71 +2.5
317,119 - GFF2891 0.72 +0.3
317,119 - GFF2891 0.72 +0.1
317,226 + GFF2891 0.85 +1.2
317,226 + GFF2891 0.85 -0.7
317,227 - GFF2891 0.85 -0.6
317,366 + -0.5
317,366 + -1.2
317,366 + -0.1
317,366 + -1.0
317,366 + -0.4
317,367 - -0.4
317,367 - +0.3
317,504 - +1.0
317,557 + -0.5
317,557 + +0.7
317,557 + -0.9
317,557 + +0.4
317,558 - -1.0
317,558 - +0.8
317,558 - -1.5
317,558 - -0.6
317,558 - -0.3
317,576 - +0.3
317,593 + +0.1
317,593 + -0.3
317,593 + -0.4
317,594 - +0.4
317,594 - +0.2
317,594 - -0.3
317,728 + GFF2892 0.19 -0.2
317,729 - GFF2892 0.19 +0.0
317,749 + GFF2892 0.21 +0.2
317,750 - GFF2892 0.21 -3.1
317,848 + GFF2892 0.29 +0.7
317,848 + GFF2892 0.29 +0.2
317,848 + GFF2892 0.29 +0.2
317,848 + GFF2892 0.29 +0.3
317,848 + GFF2892 0.29 -0.0
317,848 + GFF2892 0.29 +0.0
317,848 + GFF2892 0.29 -0.0
317,849 - GFF2892 0.30 -0.3
317,849 - GFF2892 0.30 -1.0
317,849 - GFF2892 0.30 -2.3
318,164 - GFF2892 0.56 -1.8
318,265 + GFF2892 0.65 +0.5
318,265 + GFF2892 0.65 -0.3
318,265 + GFF2892 0.65 -0.6
318,265 + GFF2892 0.65 +1.5
318,265 + GFF2892 0.65 -0.2
318,266 - GFF2892 0.65 -0.4
318,266 - GFF2892 0.65 -0.1
318,266 - GFF2892 0.65 +0.1
318,266 - GFF2892 0.65 +0.8
318,511 + GFF2892 0.86 -0.1
318,511 + GFF2892 0.86 +0.5
318,511 + GFF2892 0.86 -0.2
318,511 + GFF2892 0.86 -0.4
318,511 + GFF2892 0.86 -1.0
318,511 + GFF2892 0.86 -0.1
318,511 + GFF2892 0.86 +0.1
318,511 + GFF2892 0.86 -0.3
318,511 + GFF2892 0.86 +0.5
318,511 + GFF2892 0.86 -1.3
318,512 - GFF2892 0.86 -0.5
318,512 - GFF2892 0.86 +0.9
318,512 - GFF2892 0.86 -0.7
318,512 - GFF2892 0.86 -0.8
318,512 - GFF2892 0.86 -1.8
318,512 - GFF2892 0.86 -1.5
318,512 - GFF2892 0.86 -0.9
318,512 - GFF2892 0.86 -0.2
318,512 - GFF2892 0.86 -1.3
318,712 - +0.8
318,755 - -1.4
318,857 + +0.1
319,244 + GFF2893 0.41 -1.9
319,244 + GFF2893 0.41 +0.4
319,245 - GFF2893 0.41 -0.8
319,245 - GFF2893 0.41 -0.5
319,245 - GFF2893 0.41 -0.6
319,245 - GFF2893 0.41 -1.4
319,245 - GFF2893 0.41 +0.2
319,355 + GFF2893 0.52 -1.4
319,386 - GFF2893 0.55 +1.5
319,386 - GFF2893 0.55 +0.5
319,386 - GFF2893 0.55 -0.2
319,652 + GFF2893 0.82 -0.4
319,652 + GFF2893 0.82 -0.8
319,653 - GFF2893 0.82 +0.1

Or see this region's nucleotide sequence