Strain Fitness in Variovorax sp. SCN45 around GFF2885

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2884 and GFF2885 are separated by 101 nucleotidesGFF2885 and GFF2886 are separated by 144 nucleotides GFF2884 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 310,302 to 311,249 GFF2884 GFF2885 - Transcriptional regulator, LysR family, at 311,351 to 312,253 GFF2885 GFF2886 - Metallo-beta-lactamase superfamily protein PA0057, at 312,398 to 313,297 GFF2886 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1at 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.576 kb on + strand, within GFF2884at 310.576 kb on + strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 311.038 kb on + strand, within GFF2884at 311.038 kb on + strand, within GFF2884at 311.039 kb on - strand, within GFF2884at 311.273 kb on + strandat 311.274 kb on - strandat 311.287 kb on + strandat 311.287 kb on + strandat 311.287 kb on + strandat 311.288 kb on - strandat 311.288 kb on - strandat 311.288 kb on - strandat 311.313 kb on + strandat 311.612 kb on + strand, within GFF2885at 311.613 kb on - strand, within GFF2885at 311.613 kb on - strand, within GFF2885at 311.722 kb on + strand, within GFF2885at 311.723 kb on - strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.844 kb on - strand, within GFF2885at 311.844 kb on - strand, within GFF2885at 312.119 kb on + strand, within GFF2885at 312.119 kb on + strand, within GFF2885at 312.337 kb on + strandat 312.337 kb on + strandat 312.337 kb on + strandat 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.650 kb on + strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.674 kb on + strand, within GFF2886at 312.674 kb on + strand, within GFF2886at 312.674 kb on + strand, within GFF2886at 312.675 kb on - strand, within GFF2886at 312.675 kb on - strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.980 kb on - strand, within GFF2886at 313.082 kb on + strand, within GFF2886at 313.082 kb on + strand, within GFF2886at 313.083 kb on - strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.146 kb on - strand, within GFF2886at 313.146 kb on - strand, within GFF2886

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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310,560 + GFF2884 0.27 +1.4
310,560 + GFF2884 0.27 -0.6
310,560 + GFF2884 0.27 +0.7
310,560 + GFF2884 0.27 -0.0
310,561 - GFF2884 0.27 +0.1
310,561 - GFF2884 0.27 +0.1
310,561 - GFF2884 0.27 -0.8
310,561 - GFF2884 0.27 +0.5
310,561 - GFF2884 0.27 -0.7
310,561 - GFF2884 0.27 -0.5
310,561 - GFF2884 0.27 +0.1
310,561 - GFF2884 0.27 -0.1
310,576 + GFF2884 0.29 -0.6
310,576 + GFF2884 0.29 -0.8
310,577 - GFF2884 0.29 -0.6
310,577 - GFF2884 0.29 -0.6
310,577 - GFF2884 0.29 -0.1
311,038 + GFF2884 0.78 -0.1
311,038 + GFF2884 0.78 -0.7
311,039 - GFF2884 0.78 -0.8
311,273 + -0.6
311,274 - -0.1
311,287 + -0.1
311,287 + -0.5
311,287 + +0.0
311,288 - -0.4
311,288 - -0.3
311,288 - -0.6
311,313 + -0.8
311,612 + GFF2885 0.29 -0.5
311,613 - GFF2885 0.29 +0.0
311,613 - GFF2885 0.29 +0.8
311,722 + GFF2885 0.41 -2.2
311,723 - GFF2885 0.41 +0.0
311,843 + GFF2885 0.54 +1.0
311,843 + GFF2885 0.54 -1.1
311,843 + GFF2885 0.54 +0.3
311,844 - GFF2885 0.55 -0.1
311,844 - GFF2885 0.55 +0.0
312,119 + GFF2885 0.85 +1.1
312,119 + GFF2885 0.85 +0.5
312,337 + -0.7
312,337 + +1.1
312,337 + -0.2
312,497 + GFF2886 0.11 -0.4
312,497 + GFF2886 0.11 +0.3
312,497 + GFF2886 0.11 -0.7
312,497 + GFF2886 0.11 +0.9
312,497 + GFF2886 0.11 -0.8
312,497 + GFF2886 0.11 -0.0
312,498 - GFF2886 0.11 +0.5
312,498 - GFF2886 0.11 -0.1
312,498 - GFF2886 0.11 -0.4
312,498 - GFF2886 0.11 -1.6
312,498 - GFF2886 0.11 -0.2
312,650 + GFF2886 0.28 -0.3
312,651 - GFF2886 0.28 -0.1
312,651 - GFF2886 0.28 -0.0
312,651 - GFF2886 0.28 -0.2
312,651 - GFF2886 0.28 -0.8
312,651 - GFF2886 0.28 -1.0
312,651 - GFF2886 0.28 -0.8
312,651 - GFF2886 0.28 +0.5
312,674 + GFF2886 0.31 +0.1
312,674 + GFF2886 0.31 +0.5
312,674 + GFF2886 0.31 +0.1
312,675 - GFF2886 0.31 -0.0
312,675 - GFF2886 0.31 +1.1
312,677 + GFF2886 0.31 -0.0
312,677 + GFF2886 0.31 -1.0
312,677 + GFF2886 0.31 +0.1
312,677 + GFF2886 0.31 -0.5
312,677 + GFF2886 0.31 +0.1
312,677 + GFF2886 0.31 -0.2
312,678 - GFF2886 0.31 +0.5
312,678 - GFF2886 0.31 +0.8
312,678 - GFF2886 0.31 +0.1
312,678 - GFF2886 0.31 +0.4
312,678 - GFF2886 0.31 -1.0
312,678 - GFF2886 0.31 -0.6
312,980 - GFF2886 0.65 -0.4
313,082 + GFF2886 0.76 +0.4
313,082 + GFF2886 0.76 -0.6
313,083 - GFF2886 0.76 -0.6
313,112 + GFF2886 0.79 +0.4
313,112 + GFF2886 0.79 -1.0
313,112 + GFF2886 0.79 -0.4
313,112 + GFF2886 0.79 -0.6
313,112 + GFF2886 0.79 -0.3
313,146 - GFF2886 0.83 +0.3
313,146 - GFF2886 0.83 -0.0

Or see this region's nucleotide sequence