Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2856 and GFF2857 are separated by 24 nucleotides GFF2857 and GFF2858 overlap by 4 nucleotides GFF2858 and GFF2859 are separated by 60 nucleotides
GFF2856 - Transcriptional regulator, LysR family, at 279,439 to 280,398
GFF2856
GFF2857 - Permease of the drug/metabolite transporter (DMT) superfamily, at 280,423 to 281,310
GFF2857
GFF2858 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5), at 281,307 to 281,873
GFF2858
GFF2859 - Excinuclease ABC subunit C, at 281,934 to 283,901
GFF2859
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.424 kb on - strand at 279.865 kb on + strand, within GFF2856 at 279.865 kb on + strand, within GFF2856 at 279.865 kb on + strand, within GFF2856 at 279.865 kb on + strand, within GFF2856 at 279.866 kb on - strand, within GFF2856 at 279.866 kb on - strand, within GFF2856 at 279.866 kb on - strand, within GFF2856 at 279.866 kb on - strand, within GFF2856 at 279.866 kb on - strand, within GFF2856 at 279.866 kb on - strand, within GFF2856 at 279.866 kb on - strand, within GFF2856 at 279.866 kb on - strand, within GFF2856 at 279.970 kb on + strand, within GFF2856 at 279.970 kb on + strand, within GFF2856 at 279.971 kb on - strand, within GFF2856 at 279.971 kb on - strand, within GFF2856 at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.402 kb on + strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.403 kb on - strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.404 kb on + strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.405 kb on - strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.406 kb on + strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.407 kb on - strand at 280.550 kb on + strand, within GFF2857 at 280.550 kb on + strand, within GFF2857 at 280.550 kb on + strand, within GFF2857 at 280.551 kb on - strand, within GFF2857 at 280.551 kb on - strand, within GFF2857 at 280.551 kb on - strand, within GFF2857 at 280.551 kb on - strand, within GFF2857 at 280.588 kb on + strand, within GFF2857 at 280.588 kb on + strand, within GFF2857 at 280.588 kb on + strand, within GFF2857 at 280.588 kb on + strand, within GFF2857 at 280.588 kb on + strand, within GFF2857 at 280.589 kb on - strand, within GFF2857 at 280.589 kb on - strand, within GFF2857 at 280.589 kb on - strand, within GFF2857 at 280.589 kb on - strand, within GFF2857 at 280.589 kb on - strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.596 kb on + strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.597 kb on - strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.598 kb on + strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.599 kb on - strand, within GFF2857 at 280.800 kb on + strand, within GFF2857 at 281.051 kb on + strand, within GFF2857 at 281.168 kb on + strand, within GFF2857 at 281.169 kb on - strand, within GFF2857 at 281.169 kb on - strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.202 kb on - strand, within GFF2857 at 281.315 kb on + strand at 281.316 kb on - strand at 281.316 kb on - strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 282.083 kb on + strand at 282.083 kb on + strand at 282.211 kb on + strand, within GFF2859 at 282.211 kb on + strand, within GFF2859 at 282.211 kb on + strand, within GFF2859 at 282.212 kb on - strand, within GFF2859 at 282.212 kb on - strand, within GFF2859
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 279,424 - -0.1 279,865 + GFF2856 0.44 +1.5 279,865 + GFF2856 0.44 +0.9 279,865 + GFF2856 0.44 -0.6 279,865 + GFF2856 0.44 -0.5 279,866 - GFF2856 0.44 +0.3 279,866 - GFF2856 0.44 -0.5 279,866 - GFF2856 0.44 +0.1 279,866 - GFF2856 0.44 +0.1 279,866 - GFF2856 0.44 -0.4 279,866 - GFF2856 0.44 +0.4 279,866 - GFF2856 0.44 +0.1 279,866 - GFF2856 0.44 +0.4 279,970 + GFF2856 0.55 -2.2 279,970 + GFF2856 0.55 -0.7 279,971 - GFF2856 0.55 -0.3 279,971 - GFF2856 0.55 -0.2 280,400 + +0.5 280,400 + +0.1 280,400 + +1.1 280,400 + +0.3 280,400 + +0.6 280,400 + -0.9 280,400 + -0.8 280,400 + -0.3 280,400 + +0.8 280,400 + -1.3 280,400 + -0.4 280,401 - +0.1 280,401 - -0.3 280,401 - +0.2 280,401 - -2.4 280,401 - -0.5 280,401 - +1.3 280,401 - -1.1 280,401 - +0.3 280,402 + +0.3 280,402 + -0.1 280,402 + -1.5 280,402 + -0.4 280,402 + -0.5 280,402 + -1.6 280,402 + -0.1 280,402 + -0.6 280,402 + -0.1 280,402 + +0.5 280,402 + +0.5 280,402 + -0.1 280,402 + -1.3 280,402 + -0.1 280,403 - -0.6 280,403 - +0.1 280,403 - -0.5 280,403 - -0.2 280,403 - +0.2 280,403 - -0.4 280,403 - +0.2 280,403 - -0.1 280,403 - +0.1 280,403 - -1.0 280,403 - +0.9 280,403 - -0.7 280,404 + +0.1 280,404 + -0.1 280,404 + -0.1 280,404 + +0.1 280,404 + -0.1 280,404 + +0.0 280,404 + -0.5 280,404 + -0.9 280,404 + +1.3 280,404 + +0.1 280,404 + -1.6 280,404 + -0.4 280,404 + +2.1 280,404 + +0.5 280,404 + -0.1 280,404 + -0.6 280,404 + -0.5 280,404 + -1.1 280,404 + -0.0 280,404 + +2.1 280,404 + -0.3 280,404 + +1.0 280,404 + -0.5 280,405 - -0.1 280,405 - -0.9 280,405 - +0.7 280,405 - +0.0 280,405 - -1.4 280,405 - -0.3 280,405 - +0.3 280,405 - +0.2 280,405 - -0.3 280,405 - -0.1 280,405 - -1.0 280,405 - +0.3 280,405 - -0.4 280,405 - +0.2 280,405 - +0.0 280,405 - -0.3 280,405 - +0.2 280,405 - +0.9 280,405 - -0.7 280,405 - -0.3 280,405 - -1.1 280,405 - +0.6 280,405 - +0.5 280,406 + -0.3 280,406 + -0.3 280,406 + +0.2 280,406 + -0.1 280,406 + -0.5 280,406 + +0.4 280,406 + -0.5 280,406 + +0.4 280,406 + -0.4 280,406 + +0.0 280,406 + -1.2 280,406 + +0.5 280,406 + -0.2 280,406 + -1.8 280,406 + -1.3 280,406 + -0.2 280,406 + -0.3 280,406 + -1.3 280,406 + +0.3 280,406 + +0.1 280,406 + +1.3 280,406 + +0.4 280,406 + -0.1 280,406 + -0.0 280,406 + +1.5 280,407 - +1.2 280,407 - -0.3 280,407 - +0.5 280,407 - -0.8 280,407 - +1.1 280,407 - +0.2 280,407 - -0.4 280,407 - -0.3 280,407 - +0.6 280,407 - -0.1 280,407 - -0.4 280,407 - -0.2 280,407 - -0.3 280,407 - -0.5 280,407 - +0.9 280,407 - +2.1 280,407 - -1.1 280,407 - -0.7 280,550 + GFF2857 0.14 -0.4 280,550 + GFF2857 0.14 -0.5 280,550 + GFF2857 0.14 -0.2 280,551 - GFF2857 0.14 +0.7 280,551 - GFF2857 0.14 -0.5 280,551 - GFF2857 0.14 +1.0 280,551 - GFF2857 0.14 -0.2 280,588 + GFF2857 0.19 -0.5 280,588 + GFF2857 0.19 -0.5 280,588 + GFF2857 0.19 +1.0 280,588 + GFF2857 0.19 -0.0 280,588 + GFF2857 0.19 -0.5 280,589 - GFF2857 0.19 -0.1 280,589 - GFF2857 0.19 -0.1 280,589 - GFF2857 0.19 +0.2 280,589 - GFF2857 0.19 +0.4 280,589 - GFF2857 0.19 +0.3 280,596 + GFF2857 0.19 -0.3 280,596 + GFF2857 0.19 +0.4 280,596 + GFF2857 0.19 -0.1 280,596 + GFF2857 0.19 +0.7 280,596 + GFF2857 0.19 -0.0 280,596 + GFF2857 0.19 +0.2 280,596 + GFF2857 0.19 +0.1 280,596 + GFF2857 0.19 -0.4 280,596 + GFF2857 0.19 -0.1 280,596 + GFF2857 0.19 +0.4 280,596 + GFF2857 0.19 -0.3 280,596 + GFF2857 0.19 -0.2 280,596 + GFF2857 0.19 -0.3 280,596 + GFF2857 0.19 -1.0 280,596 + GFF2857 0.19 +0.1 280,596 + GFF2857 0.19 -0.1 280,596 + GFF2857 0.19 +0.5 280,596 + GFF2857 0.19 -0.3 280,596 + GFF2857 0.19 -0.2 280,597 - GFF2857 0.20 -0.2 280,597 - GFF2857 0.20 -0.0 280,597 - GFF2857 0.20 -0.9 280,597 - GFF2857 0.20 -0.4 280,597 - GFF2857 0.20 -0.2 280,597 - GFF2857 0.20 +0.6 280,597 - GFF2857 0.20 -0.1 280,597 - GFF2857 0.20 -0.2 280,597 - GFF2857 0.20 -0.1 280,597 - GFF2857 0.20 +0.5 280,597 - GFF2857 0.20 +0.0 280,597 - GFF2857 0.20 -0.7 280,597 - GFF2857 0.20 -0.1 280,597 - GFF2857 0.20 -0.5 280,597 - GFF2857 0.20 -0.5 280,597 - GFF2857 0.20 -0.4 280,597 - GFF2857 0.20 -0.2 280,597 - GFF2857 0.20 -0.9 280,597 - GFF2857 0.20 -1.3 280,597 - GFF2857 0.20 -0.9 280,597 - GFF2857 0.20 -0.7 280,597 - GFF2857 0.20 +0.3 280,597 - GFF2857 0.20 +0.6 280,598 + GFF2857 0.20 +1.5 280,598 + GFF2857 0.20 +1.3 280,598 + GFF2857 0.20 +0.4 280,598 + GFF2857 0.20 -0.5 280,598 + GFF2857 0.20 +0.5 280,598 + GFF2857 0.20 -0.8 280,598 + GFF2857 0.20 -1.1 280,598 + GFF2857 0.20 +0.1 280,598 + GFF2857 0.20 +0.8 280,598 + GFF2857 0.20 -0.1 280,598 + GFF2857 0.20 +0.7 280,598 + GFF2857 0.20 -0.1 280,598 + GFF2857 0.20 +0.1 280,599 - GFF2857 0.20 -0.4 280,599 - GFF2857 0.20 +0.2 280,599 - GFF2857 0.20 +0.8 280,599 - GFF2857 0.20 -0.8 280,599 - GFF2857 0.20 +0.9 280,599 - GFF2857 0.20 -0.6 280,599 - GFF2857 0.20 +1.9 280,599 - GFF2857 0.20 -1.4 280,599 - GFF2857 0.20 -0.9 280,599 - GFF2857 0.20 -0.1 280,599 - GFF2857 0.20 +0.5 280,599 - GFF2857 0.20 -0.1 280,599 - GFF2857 0.20 -0.6 280,599 - GFF2857 0.20 +0.2 280,599 - GFF2857 0.20 +0.4 280,599 - GFF2857 0.20 +0.1 280,599 - GFF2857 0.20 -0.5 280,599 - GFF2857 0.20 +0.1 280,599 - GFF2857 0.20 +0.5 280,800 + GFF2857 0.42 -1.3 281,051 + GFF2857 0.71 -0.9 281,168 + GFF2857 0.84 -1.1 281,169 - GFF2857 0.84 +0.2 281,169 - GFF2857 0.84 -1.2 281,201 + GFF2857 0.88 -0.3 281,201 + GFF2857 0.88 +0.4 281,201 + GFF2857 0.88 +0.5 281,202 - GFF2857 0.88 -1.8 281,315 + -1.8 281,316 - -0.4 281,316 - -1.9 281,950 + -0.4 281,950 + -0.1 281,950 + -0.8 281,950 + -0.3 281,950 + -0.3 281,950 + +1.3 281,950 + -0.2 281,950 + +0.1 281,951 - +0.5 281,951 - -0.0 281,951 - -0.0 281,951 - +0.8 281,951 - -0.3 281,951 - -0.4 281,951 - -0.3 281,951 - -0.8 281,951 - -1.1 281,951 - +0.7 281,951 - -0.2 281,951 - -0.9 281,951 - +1.2 281,951 - -2.2 281,951 - +0.1 282,083 + -0.3 282,083 + -0.6 282,211 + GFF2859 0.14 -0.0 282,211 + GFF2859 0.14 -0.1 282,211 + GFF2859 0.14 +0.6 282,212 - GFF2859 0.14 -0.5 282,212 - GFF2859 0.14 +1.0
Or see this region's nucleotide sequence