Strain Fitness in Variovorax sp. SCN45 around GFF2842

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2841 and GFF2842 are separated by 41 nucleotidesGFF2842 and GFF2843 are separated by 4 nucleotidesGFF2843 and GFF2844 are separated by 11 nucleotides GFF2841 - 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190), at 265,628 to 267,064 GFF2841 GFF2842 - RNA polymerase sigma factor RpoS, at 267,106 to 268,152 GFF2842 GFF2843 - Murein hydrolase activator NlpD, at 268,157 to 269,068 GFF2843 GFF2844 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 269,080 to 269,853 GFF2844 Position (kb) 267 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 266.251 kb on - strand, within GFF2841at 266.565 kb on + strand, within GFF2841at 266.566 kb on - strand, within GFF2841at 266.566 kb on - strand, within GFF2841at 266.649 kb on + strand, within GFF2841at 266.649 kb on + strand, within GFF2841at 266.650 kb on - strand, within GFF2841at 266.650 kb on - strand, within GFF2841at 266.972 kb on + strandat 266.972 kb on + strandat 266.973 kb on - strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.107 kb on + strandat 267.108 kb on - strandat 267.261 kb on - strand, within GFF2842at 267.683 kb on + strand, within GFF2842at 267.683 kb on + strand, within GFF2842at 267.683 kb on + strand, within GFF2842at 267.684 kb on - strand, within GFF2842at 267.684 kb on - strand, within GFF2842at 267.684 kb on - strand, within GFF2842at 267.791 kb on + strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.034 kb on - strand, within GFF2842at 268.034 kb on - strand, within GFF2842at 268.034 kb on - strand, within GFF2842at 268.034 kb on - strand, within GFF2842at 268.173 kb on + strandat 268.173 kb on + strandat 268.173 kb on + strandat 268.173 kb on + strandat 268.174 kb on - strandat 268.174 kb on - strandat 268.174 kb on - strandat 268.174 kb on - strandat 268.320 kb on + strand, within GFF2843at 268.320 kb on + strand, within GFF2843at 268.320 kb on + strand, within GFF2843at 268.321 kb on - strand, within GFF2843at 268.321 kb on - strand, within GFF2843at 268.321 kb on - strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.453 kb on - strand, within GFF2843at 268.453 kb on - strand, within GFF2843at 268.453 kb on - strand, within GFF2843at 268.453 kb on - strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.460 kb on - strand, within GFF2843at 268.460 kb on - strand, within GFF2843at 268.460 kb on - strand, within GFF2843at 268.460 kb on - strand, within GFF2843at 268.696 kb on + strand, within GFF2843at 268.718 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.848 kb on + strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.863 kb on + strand, within GFF2843at 268.864 kb on - strand, within GFF2843at 268.864 kb on - strand, within GFF2843at 269.059 kb on + strandat 269.060 kb on - strandat 269.073 kb on + strandat 269.073 kb on + strandat 269.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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266,251 - GFF2841 0.43 -0.1
266,565 + GFF2841 0.65 -0.8
266,566 - GFF2841 0.65 +0.4
266,566 - GFF2841 0.65 +0.2
266,649 + GFF2841 0.71 +0.9
266,649 + GFF2841 0.71 +0.2
266,650 - GFF2841 0.71 +0.8
266,650 - GFF2841 0.71 -1.1
266,972 + -0.5
266,972 + -0.5
266,973 - -0.4
267,107 + -1.2
267,107 + +0.6
267,107 + -2.6
267,107 + -0.3
267,107 + -0.3
267,107 + +0.2
267,107 + +0.1
267,107 + -1.1
267,107 + -0.5
267,107 + +0.5
267,108 - -0.0
267,261 - GFF2842 0.15 -1.8
267,683 + GFF2842 0.55 -0.5
267,683 + GFF2842 0.55 -2.5
267,683 + GFF2842 0.55 -0.1
267,684 - GFF2842 0.55 -0.7
267,684 - GFF2842 0.55 +0.7
267,684 - GFF2842 0.55 +0.2
267,791 + GFF2842 0.65 +0.5
267,792 - GFF2842 0.66 -0.1
267,792 - GFF2842 0.66 -1.4
267,792 - GFF2842 0.66 +0.3
267,792 - GFF2842 0.66 -0.2
267,792 - GFF2842 0.66 -0.7
267,887 + GFF2842 0.75 -0.9
267,887 + GFF2842 0.75 -0.5
267,887 + GFF2842 0.75 -0.1
267,887 + GFF2842 0.75 -0.4
267,887 + GFF2842 0.75 -0.7
267,887 + GFF2842 0.75 +0.6
267,887 + GFF2842 0.75 -0.4
267,887 + GFF2842 0.75 -1.2
267,887 + GFF2842 0.75 -1.0
267,887 + GFF2842 0.75 +0.3
267,888 - GFF2842 0.75 -0.4
267,888 - GFF2842 0.75 -0.2
267,888 - GFF2842 0.75 +0.5
267,888 - GFF2842 0.75 -0.5
267,888 - GFF2842 0.75 -0.9
267,888 - GFF2842 0.75 -0.1
267,935 + GFF2842 0.79 -0.2
267,935 + GFF2842 0.79 -1.5
267,935 + GFF2842 0.79 +1.2
267,935 + GFF2842 0.79 -0.1
267,935 + GFF2842 0.79 +0.2
267,935 + GFF2842 0.79 -0.5
267,935 + GFF2842 0.79 +0.2
267,935 + GFF2842 0.79 -1.1
267,935 + GFF2842 0.79 -1.2
267,935 + GFF2842 0.79 -0.4
267,935 + GFF2842 0.79 -0.5
267,936 - GFF2842 0.79 +0.5
267,936 - GFF2842 0.79 -1.2
267,936 - GFF2842 0.79 -0.6
267,936 - GFF2842 0.79 -2.1
267,936 - GFF2842 0.79 -0.3
267,936 - GFF2842 0.79 -1.0
267,936 - GFF2842 0.79 +0.7
267,936 - GFF2842 0.79 -0.2
267,936 - GFF2842 0.79 -0.5
267,936 - GFF2842 0.79 -1.7
267,936 - GFF2842 0.79 +0.5
267,936 - GFF2842 0.79 -0.1
268,033 + GFF2842 0.89 +0.6
268,033 + GFF2842 0.89 -0.7
268,033 + GFF2842 0.89 -0.2
268,033 + GFF2842 0.89 -0.1
268,033 + GFF2842 0.89 -0.6
268,034 - GFF2842 0.89 +0.3
268,034 - GFF2842 0.89 -0.7
268,034 - GFF2842 0.89 -0.6
268,034 - GFF2842 0.89 +0.4
268,173 + -0.2
268,173 + -0.7
268,173 + -0.1
268,173 + -0.9
268,174 - -0.8
268,174 - +0.9
268,174 - -0.1
268,174 - -0.4
268,320 + GFF2843 0.18 -0.2
268,320 + GFF2843 0.18 -0.3
268,320 + GFF2843 0.18 -1.0
268,321 - GFF2843 0.18 -0.8
268,321 - GFF2843 0.18 -0.5
268,321 - GFF2843 0.18 -0.9
268,332 + GFF2843 0.19 -1.5
268,332 + GFF2843 0.19 +1.2
268,332 + GFF2843 0.19 -0.3
268,332 + GFF2843 0.19 -0.3
268,332 + GFF2843 0.19 -0.3
268,332 + GFF2843 0.19 -0.1
268,332 + GFF2843 0.19 +0.3
268,332 + GFF2843 0.19 -0.5
268,332 + GFF2843 0.19 -0.5
268,332 + GFF2843 0.19 -0.2
268,332 + GFF2843 0.19 +0.1
268,332 + GFF2843 0.19 +0.4
268,332 + GFF2843 0.19 +0.5
268,333 - GFF2843 0.19 -0.2
268,333 - GFF2843 0.19 -0.2
268,333 - GFF2843 0.19 -0.3
268,333 - GFF2843 0.19 -1.5
268,333 - GFF2843 0.19 -0.8
268,333 - GFF2843 0.19 -0.4
268,333 - GFF2843 0.19 +0.4
268,333 - GFF2843 0.19 -0.7
268,333 - GFF2843 0.19 -0.4
268,333 - GFF2843 0.19 -0.7
268,333 - GFF2843 0.19 +0.8
268,333 - GFF2843 0.19 -0.6
268,333 - GFF2843 0.19 +1.1
268,333 - GFF2843 0.19 +0.7
268,333 - GFF2843 0.19 -0.9
268,333 - GFF2843 0.19 +0.7
268,333 - GFF2843 0.19 +0.5
268,333 - GFF2843 0.19 -0.7
268,392 + GFF2843 0.26 +0.4
268,392 + GFF2843 0.26 -0.3
268,392 + GFF2843 0.26 -0.5
268,392 + GFF2843 0.26 -1.8
268,392 + GFF2843 0.26 -0.1
268,392 + GFF2843 0.26 -1.0
268,392 + GFF2843 0.26 -0.1
268,392 + GFF2843 0.26 -0.1
268,393 - GFF2843 0.26 -0.2
268,393 - GFF2843 0.26 -0.6
268,393 - GFF2843 0.26 -0.5
268,393 - GFF2843 0.26 -1.3
268,393 - GFF2843 0.26 -0.7
268,393 - GFF2843 0.26 -0.6
268,452 + GFF2843 0.32 +0.1
268,452 + GFF2843 0.32 +0.7
268,452 + GFF2843 0.32 -3.2
268,452 + GFF2843 0.32 -1.3
268,452 + GFF2843 0.32 -0.1
268,452 + GFF2843 0.32 -0.7
268,453 - GFF2843 0.32 +0.4
268,453 - GFF2843 0.32 -1.1
268,453 - GFF2843 0.32 -1.6
268,453 - GFF2843 0.32 -0.0
268,459 + GFF2843 0.33 -0.9
268,459 + GFF2843 0.33 -0.5
268,459 + GFF2843 0.33 -1.3
268,459 + GFF2843 0.33 -0.8
268,459 + GFF2843 0.33 +1.5
268,460 - GFF2843 0.33 -0.3
268,460 - GFF2843 0.33 -0.1
268,460 - GFF2843 0.33 -0.2
268,460 - GFF2843 0.33 -0.8
268,696 + GFF2843 0.59 -1.5
268,718 + GFF2843 0.62 -1.6
268,845 + GFF2843 0.75 -0.2
268,845 + GFF2843 0.75 -1.2
268,845 + GFF2843 0.75 +0.2
268,845 + GFF2843 0.75 +0.3
268,845 + GFF2843 0.75 +0.2
268,845 + GFF2843 0.75 -0.7
268,845 + GFF2843 0.75 -0.1
268,845 + GFF2843 0.75 -1.6
268,846 - GFF2843 0.76 -0.2
268,846 - GFF2843 0.76 +0.1
268,846 - GFF2843 0.76 +0.3
268,846 - GFF2843 0.76 -1.5
268,846 - GFF2843 0.76 +1.8
268,846 - GFF2843 0.76 -0.9
268,846 - GFF2843 0.76 -1.4
268,846 - GFF2843 0.76 +0.9
268,848 + GFF2843 0.76 -0.3
268,849 - GFF2843 0.76 -0.4
268,849 - GFF2843 0.76 -0.8
268,849 - GFF2843 0.76 -0.2
268,849 - GFF2843 0.76 -0.8
268,849 - GFF2843 0.76 +0.2
268,863 + GFF2843 0.77 +0.9
268,864 - GFF2843 0.78 -0.2
268,864 - GFF2843 0.78 -1.9
269,059 + -0.6
269,060 - -1.2
269,073 + -0.1
269,073 + -0.3
269,074 - +0.5

Or see this region's nucleotide sequence