Strain Fitness in Variovorax sp. SCN45 around GFF2780

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2779 and GFF2780 are separated by 58 nucleotidesGFF2780 and GFF2781 are separated by 97 nucleotidesGFF2781 and GFF2782 overlap by 4 nucleotides GFF2779 - Transcriptional regulator, AraC family, at 209,768 to 210,640 GFF2779 GFF2780 - Phosphoesterase, PA-phosphatase related, at 210,699 to 211,433 GFF2780 GFF2781 - Phosphopantetheine-binding, at 211,531 to 211,773 GFF2781 GFF2782 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 211,770 to 212,978 GFF2782 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.715 kb on - strandat 209.715 kb on - strandat 209.715 kb on - strandat 209.715 kb on - strandat 209.715 kb on - strandat 209.864 kb on + strand, within GFF2779at 209.864 kb on + strand, within GFF2779at 209.864 kb on + strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.098 kb on + strand, within GFF2779at 210.098 kb on + strand, within GFF2779at 210.098 kb on + strand, within GFF2779at 210.098 kb on + strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.545 kb on + strand, within GFF2779at 210.545 kb on + strand, within GFF2779at 210.546 kb on - strand, within GFF2779at 210.546 kb on - strand, within GFF2779at 210.841 kb on - strand, within GFF2780at 210.925 kb on - strand, within GFF2780at 210.939 kb on + strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 211.008 kb on + strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.275 kb on + strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.362 kb on + strandat 211.362 kb on + strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.415 kb on + strandat 211.416 kb on - strandat 211.573 kb on + strand, within GFF2781at 211.573 kb on + strand, within GFF2781at 211.574 kb on - strand, within GFF2781at 212.005 kb on + strand, within GFF2782at 212.005 kb on + strand, within GFF2782at 212.006 kb on - strand, within GFF2782at 212.006 kb on - strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
209,714 + +0.6
209,714 + -0.5
209,714 + +0.2
209,714 + +0.2
209,714 + +0.3
209,714 + +0.1
209,714 + -0.2
209,715 - +0.7
209,715 - +0.9
209,715 - -0.4
209,715 - -2.2
209,715 - +0.4
209,864 + GFF2779 0.11 -0.1
209,864 + GFF2779 0.11 +0.5
209,864 + GFF2779 0.11 -0.8
209,865 - GFF2779 0.11 -0.4
209,865 - GFF2779 0.11 -0.6
209,865 - GFF2779 0.11 +0.3
209,865 - GFF2779 0.11 +0.3
209,865 - GFF2779 0.11 +1.1
209,865 - GFF2779 0.11 -0.7
210,008 + GFF2779 0.27 +0.3
210,008 + GFF2779 0.27 -0.4
210,008 + GFF2779 0.27 -0.6
210,008 + GFF2779 0.27 +0.1
210,008 + GFF2779 0.27 +0.4
210,008 + GFF2779 0.27 +1.5
210,008 + GFF2779 0.27 +0.4
210,008 + GFF2779 0.27 -0.5
210,008 + GFF2779 0.27 +0.3
210,008 + GFF2779 0.27 -0.1
210,008 + GFF2779 0.27 +1.0
210,008 + GFF2779 0.27 +1.3
210,008 + GFF2779 0.27 +0.2
210,008 + GFF2779 0.27 +0.7
210,008 + GFF2779 0.27 -0.5
210,009 - GFF2779 0.28 +0.2
210,009 - GFF2779 0.28 -0.7
210,009 - GFF2779 0.28 -0.8
210,009 - GFF2779 0.28 -0.5
210,009 - GFF2779 0.28 +0.5
210,009 - GFF2779 0.28 -1.2
210,009 - GFF2779 0.28 +0.4
210,009 - GFF2779 0.28 +0.1
210,009 - GFF2779 0.28 -0.2
210,009 - GFF2779 0.28 +1.5
210,009 - GFF2779 0.28 -0.3
210,098 + GFF2779 0.38 -0.7
210,098 + GFF2779 0.38 -0.5
210,098 + GFF2779 0.38 -0.4
210,098 + GFF2779 0.38 +0.4
210,099 - GFF2779 0.38 -0.9
210,099 - GFF2779 0.38 -0.1
210,099 - GFF2779 0.38 +0.5
210,099 - GFF2779 0.38 +1.1
210,099 - GFF2779 0.38 -0.2
210,545 + GFF2779 0.89 -0.1
210,545 + GFF2779 0.89 -0.7
210,546 - GFF2779 0.89 +0.3
210,546 - GFF2779 0.89 -0.1
210,841 - GFF2780 0.19 -1.1
210,925 - GFF2780 0.31 -0.5
210,939 + GFF2780 0.33 +0.3
210,940 - GFF2780 0.33 -0.7
210,940 - GFF2780 0.33 +0.2
210,940 - GFF2780 0.33 +0.5
210,957 + GFF2780 0.35 +0.3
210,957 + GFF2780 0.35 -0.2
210,957 + GFF2780 0.35 -0.5
210,957 + GFF2780 0.35 -0.0
210,957 + GFF2780 0.35 -0.4
210,957 + GFF2780 0.35 +0.8
210,957 + GFF2780 0.35 +0.3
210,957 + GFF2780 0.35 +0.3
210,957 + GFF2780 0.35 -0.1
210,957 + GFF2780 0.35 -0.3
210,957 + GFF2780 0.35 -1.1
210,957 + GFF2780 0.35 -0.5
210,957 + GFF2780 0.35 +0.2
210,957 + GFF2780 0.35 +0.3
210,957 + GFF2780 0.35 +0.2
210,958 - GFF2780 0.35 +0.2
210,958 - GFF2780 0.35 +0.3
210,958 - GFF2780 0.35 -0.1
210,958 - GFF2780 0.35 -0.9
210,958 - GFF2780 0.35 +0.3
210,958 - GFF2780 0.35 -0.7
210,958 - GFF2780 0.35 +0.9
210,958 - GFF2780 0.35 -0.1
210,958 - GFF2780 0.35 -0.5
210,958 - GFF2780 0.35 +0.3
211,008 + GFF2780 0.42 +1.6
211,009 - GFF2780 0.42 +0.1
211,009 - GFF2780 0.42 -0.4
211,009 - GFF2780 0.42 +0.8
211,056 + GFF2780 0.49 -0.5
211,056 + GFF2780 0.49 +0.2
211,056 + GFF2780 0.49 -1.0
211,056 + GFF2780 0.49 +1.5
211,056 + GFF2780 0.49 +1.0
211,056 + GFF2780 0.49 +0.2
211,056 + GFF2780 0.49 -0.6
211,057 - GFF2780 0.49 +0.2
211,057 - GFF2780 0.49 -0.1
211,057 - GFF2780 0.49 +1.5
211,057 - GFF2780 0.49 -0.7
211,057 - GFF2780 0.49 -0.5
211,057 - GFF2780 0.49 +0.1
211,275 + GFF2780 0.78 +0.9
211,276 - GFF2780 0.79 -0.1
211,276 - GFF2780 0.79 -0.5
211,276 - GFF2780 0.79 -0.5
211,362 + +0.3
211,362 + -0.7
211,363 - -0.8
211,363 - -0.7
211,363 - +0.1
211,363 - +0.5
211,415 + -0.1
211,416 - +2.5
211,573 + GFF2781 0.17 -0.3
211,573 + GFF2781 0.17 -0.2
211,574 - GFF2781 0.18 -1.7
212,005 + GFF2782 0.19 +0.1
212,005 + GFF2782 0.19 -0.8
212,006 - GFF2782 0.20 -0.0
212,006 - GFF2782 0.20 -0.5
212,217 + GFF2782 0.37 -0.5
212,217 + GFF2782 0.37 -0.5
212,217 + GFF2782 0.37 -0.3
212,217 + GFF2782 0.37 -0.6
212,217 + GFF2782 0.37 -0.7
212,217 + GFF2782 0.37 -0.2
212,218 - GFF2782 0.37 -0.1
212,218 - GFF2782 0.37 -0.0
212,218 - GFF2782 0.37 -0.2
212,218 - GFF2782 0.37 -0.0

Or see this region's nucleotide sequence