Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2776 and GFF2777 are separated by 103 nucleotides GFF2777 and GFF2778 are separated by 40 nucleotides GFF2778 and GFF2779 are separated by 89 nucleotides
GFF2776 - hypothetical protein, at 206,485 to 207,528
GFF2776
GFF2777 - Uncharacterized UPF0721 integral membrane protein, at 207,632 to 208,384
GFF2777
GFF2778 - Fosmidomycin resistance protein, at 208,425 to 209,678
GFF2778
GFF2779 - Transcriptional regulator, AraC family, at 209,768 to 210,640
GFF2779
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1 at 207.464 kb on + strand at 207.464 kb on + strand at 207.464 kb on + strand at 207.465 kb on - strand at 207.465 kb on - strand at 207.465 kb on - strand at 207.465 kb on - strand at 207.557 kb on + strand at 207.557 kb on + strand at 207.557 kb on + strand at 207.557 kb on + strand at 207.557 kb on + strand at 207.558 kb on - strand at 207.558 kb on - strand at 207.741 kb on + strand, within GFF2777 at 207.741 kb on + strand, within GFF2777 at 207.741 kb on + strand, within GFF2777 at 207.742 kb on - strand, within GFF2777 at 207.742 kb on - strand, within GFF2777 at 207.742 kb on - strand, within GFF2777 at 207.742 kb on - strand, within GFF2777 at 207.918 kb on - strand, within GFF2777 at 207.918 kb on - strand, within GFF2777 at 207.918 kb on - strand, within GFF2777 at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.371 kb on + strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.372 kb on - strand at 208.397 kb on - strand at 208.399 kb on - strand at 208.531 kb on + strand at 208.531 kb on + strand at 208.531 kb on + strand at 208.532 kb on - strand at 208.532 kb on - strand at 208.600 kb on + strand, within GFF2778 at 208.600 kb on + strand, within GFF2778 at 208.601 kb on - strand, within GFF2778 at 208.601 kb on - strand, within GFF2778 at 208.601 kb on - strand, within GFF2778 at 208.612 kb on + strand, within GFF2778 at 208.612 kb on + strand, within GFF2778 at 208.612 kb on + strand, within GFF2778 at 208.613 kb on - strand, within GFF2778 at 208.613 kb on - strand, within GFF2778 at 208.613 kb on - strand, within GFF2778 at 208.613 kb on - strand, within GFF2778 at 208.613 kb on - strand, within GFF2778 at 208.678 kb on - strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.864 kb on + strand, within GFF2778 at 208.865 kb on - strand, within GFF2778 at 208.865 kb on - strand, within GFF2778 at 208.865 kb on - strand, within GFF2778 at 208.865 kb on - strand, within GFF2778 at 208.865 kb on - strand, within GFF2778 at 208.865 kb on - strand, within GFF2778 at 208.963 kb on + strand, within GFF2778 at 208.963 kb on + strand, within GFF2778 at 208.964 kb on - strand, within GFF2778 at 208.964 kb on - strand, within GFF2778 at 208.964 kb on - strand, within GFF2778 at 208.964 kb on - strand, within GFF2778 at 209.098 kb on + strand, within GFF2778 at 209.099 kb on - strand, within GFF2778 at 209.099 kb on - strand, within GFF2778 at 209.167 kb on + strand, within GFF2778 at 209.167 kb on + strand, within GFF2778 at 209.168 kb on - strand, within GFF2778 at 209.168 kb on - strand, within GFF2778 at 209.168 kb on - strand, within GFF2778 at 209.242 kb on + strand, within GFF2778 at 209.242 kb on + strand, within GFF2778 at 209.242 kb on + strand, within GFF2778 at 209.242 kb on + strand, within GFF2778 at 209.242 kb on + strand, within GFF2778 at 209.243 kb on - strand, within GFF2778 at 209.243 kb on - strand, within GFF2778 at 209.243 kb on - strand, within GFF2778 at 209.243 kb on - strand, within GFF2778 at 209.243 kb on - strand, within GFF2778 at 209.243 kb on - strand, within GFF2778 at 209.290 kb on + strand, within GFF2778 at 209.291 kb on - strand, within GFF2778 at 209.291 kb on - strand, within GFF2778 at 209.291 kb on - strand, within GFF2778 at 209.356 kb on + strand, within GFF2778 at 209.356 kb on + strand, within GFF2778 at 209.356 kb on + strand, within GFF2778 at 209.357 kb on - strand, within GFF2778 at 209.357 kb on - strand, within GFF2778 at 209.357 kb on - strand, within GFF2778 at 209.357 kb on - strand, within GFF2778 at 209.357 kb on - strand, within GFF2778 at 209.357 kb on - strand, within GFF2778 at 209.518 kb on + strand, within GFF2778 at 209.518 kb on + strand, within GFF2778 at 209.518 kb on + strand, within GFF2778 at 209.518 kb on + strand, within GFF2778 at 209.518 kb on + strand, within GFF2778 at 209.519 kb on - strand, within GFF2778 at 209.519 kb on - strand, within GFF2778 at 209.519 kb on - strand, within GFF2778 at 209.519 kb on - strand, within GFF2778 at 209.519 kb on - strand, within GFF2778 at 209.519 kb on - strand, within GFF2778 at 209.687 kb on - strand at 209.714 kb on + strand at 209.714 kb on + strand at 209.714 kb on + strand at 209.714 kb on + strand at 209.714 kb on + strand at 209.714 kb on + strand at 209.714 kb on + strand at 209.715 kb on - strand at 209.715 kb on - strand at 209.715 kb on - strand at 209.715 kb on - strand at 209.715 kb on - strand at 209.864 kb on + strand, within GFF2779 at 209.864 kb on + strand, within GFF2779 at 209.864 kb on + strand, within GFF2779 at 209.865 kb on - strand, within GFF2779 at 209.865 kb on - strand, within GFF2779 at 209.865 kb on - strand, within GFF2779 at 209.865 kb on - strand, within GFF2779 at 209.865 kb on - strand, within GFF2779 at 209.865 kb on - strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.008 kb on + strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.009 kb on - strand, within GFF2779 at 210.098 kb on + strand, within GFF2779 at 210.098 kb on + strand, within GFF2779 at 210.098 kb on + strand, within GFF2779 at 210.098 kb on + strand, within GFF2779 at 210.099 kb on - strand, within GFF2779 at 210.099 kb on - strand, within GFF2779 at 210.099 kb on - strand, within GFF2779 at 210.099 kb on - strand, within GFF2779 at 210.099 kb on - strand, within GFF2779 at 210.545 kb on + strand, within GFF2779 at 210.545 kb on + strand, within GFF2779 at 210.546 kb on - strand, within GFF2779 at 210.546 kb on - strand, within GFF2779
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 207,464 + -0.6 207,464 + -0.5 207,464 + +0.2 207,465 - -0.0 207,465 - -1.0 207,465 - -0.2 207,465 - -0.2 207,557 + -0.3 207,557 + +0.5 207,557 + -1.0 207,557 + -0.1 207,557 + +0.3 207,558 - -0.1 207,558 - -0.7 207,741 + GFF2777 0.14 +0.1 207,741 + GFF2777 0.14 -0.3 207,741 + GFF2777 0.14 +0.0 207,742 - GFF2777 0.15 -0.1 207,742 - GFF2777 0.15 -0.5 207,742 - GFF2777 0.15 -0.3 207,742 - GFF2777 0.15 -1.1 207,918 - GFF2777 0.38 +0.5 207,918 - GFF2777 0.38 -0.1 207,918 - GFF2777 0.38 -1.1 208,371 + +1.2 208,371 + +0.1 208,371 + +0.5 208,371 + -0.4 208,371 + +1.0 208,371 + -0.8 208,371 + -1.6 208,371 + -0.3 208,371 + -0.1 208,371 + -0.6 208,371 + -0.9 208,371 + -0.2 208,371 + -1.1 208,371 + -0.3 208,371 + -1.1 208,371 + -0.9 208,371 + +0.0 208,371 + -1.1 208,371 + -0.8 208,371 + +0.4 208,371 + +1.1 208,372 - -0.3 208,372 - +0.1 208,372 - +0.1 208,372 - -0.3 208,372 - -0.3 208,372 - +0.1 208,372 - +0.2 208,372 - +0.5 208,372 - +0.2 208,372 - -0.1 208,372 - -0.3 208,372 - -0.5 208,372 - -0.3 208,372 - -0.9 208,372 - +0.7 208,372 - -0.2 208,372 - -1.8 208,372 - -0.1 208,372 - -0.6 208,372 - -2.1 208,372 - -0.8 208,372 - -0.1 208,372 - +0.3 208,397 - -0.8 208,399 - +1.3 208,531 + +1.0 208,531 + +0.4 208,531 + -0.1 208,532 - +0.9 208,532 - +0.5 208,600 + GFF2778 0.14 +0.4 208,600 + GFF2778 0.14 -0.2 208,601 - GFF2778 0.14 -0.1 208,601 - GFF2778 0.14 -1.5 208,601 - GFF2778 0.14 -1.0 208,612 + GFF2778 0.15 -0.3 208,612 + GFF2778 0.15 +0.2 208,612 + GFF2778 0.15 -1.2 208,613 - GFF2778 0.15 -0.5 208,613 - GFF2778 0.15 -1.5 208,613 - GFF2778 0.15 -0.3 208,613 - GFF2778 0.15 -0.4 208,613 - GFF2778 0.15 +0.0 208,678 - GFF2778 0.20 -0.3 208,864 + GFF2778 0.35 +0.0 208,864 + GFF2778 0.35 -0.8 208,864 + GFF2778 0.35 -0.5 208,864 + GFF2778 0.35 -0.6 208,864 + GFF2778 0.35 -1.7 208,864 + GFF2778 0.35 -0.5 208,864 + GFF2778 0.35 -1.2 208,864 + GFF2778 0.35 -1.7 208,864 + GFF2778 0.35 -0.4 208,864 + GFF2778 0.35 +0.4 208,864 + GFF2778 0.35 -0.7 208,865 - GFF2778 0.35 +0.0 208,865 - GFF2778 0.35 -1.2 208,865 - GFF2778 0.35 -0.5 208,865 - GFF2778 0.35 -0.3 208,865 - GFF2778 0.35 -0.7 208,865 - GFF2778 0.35 -0.7 208,963 + GFF2778 0.43 -0.8 208,963 + GFF2778 0.43 +0.0 208,964 - GFF2778 0.43 -0.6 208,964 - GFF2778 0.43 -0.5 208,964 - GFF2778 0.43 +0.0 208,964 - GFF2778 0.43 -0.5 209,098 + GFF2778 0.54 -0.4 209,099 - GFF2778 0.54 -1.4 209,099 - GFF2778 0.54 -1.2 209,167 + GFF2778 0.59 -0.1 209,167 + GFF2778 0.59 -0.2 209,168 - GFF2778 0.59 -0.2 209,168 - GFF2778 0.59 -0.9 209,168 - GFF2778 0.59 -1.1 209,242 + GFF2778 0.65 -1.3 209,242 + GFF2778 0.65 -0.1 209,242 + GFF2778 0.65 -0.7 209,242 + GFF2778 0.65 -0.8 209,242 + GFF2778 0.65 -0.3 209,243 - GFF2778 0.65 +0.4 209,243 - GFF2778 0.65 +0.4 209,243 - GFF2778 0.65 -0.8 209,243 - GFF2778 0.65 -0.8 209,243 - GFF2778 0.65 -0.8 209,243 - GFF2778 0.65 -1.1 209,290 + GFF2778 0.69 -1.5 209,291 - GFF2778 0.69 -1.3 209,291 - GFF2778 0.69 +0.2 209,291 - GFF2778 0.69 -0.2 209,356 + GFF2778 0.74 -0.3 209,356 + GFF2778 0.74 -0.8 209,356 + GFF2778 0.74 -1.4 209,357 - GFF2778 0.74 +0.5 209,357 - GFF2778 0.74 +1.1 209,357 - GFF2778 0.74 +0.5 209,357 - GFF2778 0.74 -0.5 209,357 - GFF2778 0.74 -0.4 209,357 - GFF2778 0.74 +1.5 209,518 + GFF2778 0.87 -1.3 209,518 + GFF2778 0.87 -0.8 209,518 + GFF2778 0.87 +0.2 209,518 + GFF2778 0.87 +0.1 209,518 + GFF2778 0.87 -0.8 209,519 - GFF2778 0.87 -0.7 209,519 - GFF2778 0.87 -0.4 209,519 - GFF2778 0.87 +0.1 209,519 - GFF2778 0.87 -0.3 209,519 - GFF2778 0.87 -0.4 209,519 - GFF2778 0.87 -2.6 209,687 - +0.1 209,714 + +0.6 209,714 + -0.5 209,714 + +0.2 209,714 + +0.2 209,714 + +0.3 209,714 + +0.1 209,714 + -0.2 209,715 - +0.7 209,715 - +0.9 209,715 - -0.4 209,715 - -2.2 209,715 - +0.4 209,864 + GFF2779 0.11 -0.1 209,864 + GFF2779 0.11 +0.5 209,864 + GFF2779 0.11 -0.8 209,865 - GFF2779 0.11 -0.4 209,865 - GFF2779 0.11 -0.6 209,865 - GFF2779 0.11 +0.3 209,865 - GFF2779 0.11 +0.3 209,865 - GFF2779 0.11 +1.1 209,865 - GFF2779 0.11 -0.7 210,008 + GFF2779 0.27 +0.3 210,008 + GFF2779 0.27 -0.4 210,008 + GFF2779 0.27 -0.6 210,008 + GFF2779 0.27 +0.1 210,008 + GFF2779 0.27 +0.4 210,008 + GFF2779 0.27 +1.5 210,008 + GFF2779 0.27 +0.4 210,008 + GFF2779 0.27 -0.5 210,008 + GFF2779 0.27 +0.3 210,008 + GFF2779 0.27 -0.1 210,008 + GFF2779 0.27 +1.0 210,008 + GFF2779 0.27 +1.3 210,008 + GFF2779 0.27 +0.2 210,008 + GFF2779 0.27 +0.7 210,008 + GFF2779 0.27 -0.5 210,009 - GFF2779 0.28 +0.2 210,009 - GFF2779 0.28 -0.7 210,009 - GFF2779 0.28 -0.8 210,009 - GFF2779 0.28 -0.5 210,009 - GFF2779 0.28 +0.5 210,009 - GFF2779 0.28 -1.2 210,009 - GFF2779 0.28 +0.4 210,009 - GFF2779 0.28 +0.1 210,009 - GFF2779 0.28 -0.2 210,009 - GFF2779 0.28 +1.5 210,009 - GFF2779 0.28 -0.3 210,098 + GFF2779 0.38 -0.7 210,098 + GFF2779 0.38 -0.5 210,098 + GFF2779 0.38 -0.4 210,098 + GFF2779 0.38 +0.4 210,099 - GFF2779 0.38 -0.9 210,099 - GFF2779 0.38 -0.1 210,099 - GFF2779 0.38 +0.5 210,099 - GFF2779 0.38 +1.1 210,099 - GFF2779 0.38 -0.2 210,545 + GFF2779 0.89 -0.1 210,545 + GFF2779 0.89 -0.7 210,546 - GFF2779 0.89 +0.3 210,546 - GFF2779 0.89 -0.1
Or see this region's nucleotide sequence