Strain Fitness in Variovorax sp. SCN45 around GFF2744

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2742 and GFF2743 are separated by 91 nucleotidesGFF2743 and GFF2744 are separated by 94 nucleotidesGFF2744 and GFF2745 overlap by 4 nucleotides GFF2742 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 177,553 to 178,329 GFF2742 GFF2743 - hypothetical protein, at 178,421 to 178,726 GFF2743 GFF2744 - FIG00932369: hypothetical protein, at 178,821 to 179,321 GFF2744 GFF2745 - FIG074102: hypothetical protein, at 179,318 to 180,460 GFF2745 Position (kb) 178 179 180Strain fitness (log2 ratio) -2 -1 0 1 2at 177.989 kb on + strand, within GFF2742at 177.989 kb on + strand, within GFF2742at 177.989 kb on + strand, within GFF2742at 177.990 kb on - strand, within GFF2742at 177.990 kb on - strand, within GFF2742at 178.088 kb on - strand, within GFF2742at 178.088 kb on - strand, within GFF2742at 178.123 kb on + strand, within GFF2742at 178.123 kb on + strand, within GFF2742at 178.123 kb on + strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.124 kb on - strand, within GFF2742at 178.359 kb on + strandat 178.359 kb on + strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.360 kb on - strandat 178.368 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.422 kb on + strandat 178.423 kb on - strandat 178.423 kb on - strandat 178.768 kb on + strandat 178.778 kb on + strandat 178.778 kb on + strandat 178.778 kb on + strandat 178.779 kb on - strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.790 kb on + strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.791 kb on - strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.822 kb on + strandat 178.823 kb on - strandat 178.823 kb on - strandat 178.823 kb on - strandat 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.499 kb on + strand, within GFF2745at 179.773 kb on - strand, within GFF2745at 179.886 kb on + strand, within GFF2745at 179.887 kb on - strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.093 kb on + strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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177,989 + GFF2742 0.56 -0.5
177,989 + GFF2742 0.56 -1.7
177,989 + GFF2742 0.56 -0.1
177,990 - GFF2742 0.56 +0.9
177,990 - GFF2742 0.56 -0.5
178,088 - GFF2742 0.69 +0.9
178,088 - GFF2742 0.69 -0.6
178,123 + GFF2742 0.73 -0.8
178,123 + GFF2742 0.73 -0.6
178,123 + GFF2742 0.73 -0.1
178,124 - GFF2742 0.73 -0.2
178,124 - GFF2742 0.73 -0.9
178,124 - GFF2742 0.73 -0.4
178,124 - GFF2742 0.73 +0.0
178,124 - GFF2742 0.73 -0.7
178,124 - GFF2742 0.73 -2.4
178,124 - GFF2742 0.73 +0.5
178,124 - GFF2742 0.73 -0.1
178,124 - GFF2742 0.73 -0.5
178,359 + -0.5
178,359 + -0.0
178,360 - -0.7
178,360 - -0.8
178,360 - -1.0
178,360 - -0.1
178,368 + +0.2
178,422 + +1.3
178,422 + -0.4
178,422 + -0.5
178,422 + -2.1
178,422 + +0.1
178,422 + +0.6
178,423 - -0.4
178,423 - -0.1
178,768 + -0.9
178,778 + +0.6
178,778 + -1.1
178,778 + +0.1
178,779 - +0.5
178,790 + -0.4
178,790 + -0.5
178,790 + -0.4
178,790 + +0.5
178,790 + +0.1
178,790 + -0.5
178,790 + +0.1
178,791 - +1.5
178,791 - -0.5
178,791 - -0.1
178,791 - +0.7
178,791 - +0.4
178,791 - -0.1
178,822 + -0.5
178,822 + -0.5
178,822 + +0.9
178,822 + +0.4
178,822 + -0.1
178,822 + -0.6
178,822 + -0.8
178,822 + -0.1
178,823 - +0.3
178,823 - +1.5
178,823 - +0.0
179,481 + GFF2745 0.14 -1.2
179,481 + GFF2745 0.14 -0.6
179,481 + GFF2745 0.14 +0.5
179,481 + GFF2745 0.14 -0.3
179,481 + GFF2745 0.14 -0.5
179,481 + GFF2745 0.14 -0.5
179,481 + GFF2745 0.14 -2.0
179,481 + GFF2745 0.14 -0.4
179,481 + GFF2745 0.14 -0.3
179,481 + GFF2745 0.14 +1.0
179,481 + GFF2745 0.14 -0.1
179,481 + GFF2745 0.14 -0.2
179,482 - GFF2745 0.14 +1.3
179,482 - GFF2745 0.14 +0.0
179,482 - GFF2745 0.14 -0.5
179,482 - GFF2745 0.14 -0.1
179,482 - GFF2745 0.14 -0.7
179,482 - GFF2745 0.14 -0.5
179,482 - GFF2745 0.14 +0.9
179,482 - GFF2745 0.14 +2.5
179,482 - GFF2745 0.14 +0.2
179,482 - GFF2745 0.14 -0.7
179,482 - GFF2745 0.14 -0.6
179,482 - GFF2745 0.14 -0.4
179,499 + GFF2745 0.16 -0.8
179,773 - GFF2745 0.40 -1.4
179,886 + GFF2745 0.50 -0.7
179,887 - GFF2745 0.50 +0.7
179,901 + GFF2745 0.51 +0.7
179,901 + GFF2745 0.51 +0.8
179,901 + GFF2745 0.51 -0.5
179,901 + GFF2745 0.51 -0.2
179,901 + GFF2745 0.51 -0.5
179,901 + GFF2745 0.51 +1.1
179,901 + GFF2745 0.51 -1.3
179,901 + GFF2745 0.51 +0.1
179,901 + GFF2745 0.51 -2.3
179,901 + GFF2745 0.51 -0.8
179,902 - GFF2745 0.51 -0.1
179,902 - GFF2745 0.51 +0.5
179,902 - GFF2745 0.51 +1.5
179,902 - GFF2745 0.51 -1.2
179,902 - GFF2745 0.51 +0.5
179,957 + GFF2745 0.56 -0.2
179,957 + GFF2745 0.56 -1.4
179,957 + GFF2745 0.56 +0.2
179,958 - GFF2745 0.56 -0.3
179,958 - GFF2745 0.56 -0.1
179,958 - GFF2745 0.56 -0.4
180,051 + GFF2745 0.64 +0.8
180,051 + GFF2745 0.64 +0.3
180,051 + GFF2745 0.64 -0.5
180,051 + GFF2745 0.64 -1.0
180,051 + GFF2745 0.64 -0.8
180,051 + GFF2745 0.64 -2.1
180,051 + GFF2745 0.64 -1.0
180,051 + GFF2745 0.64 -0.1
180,051 + GFF2745 0.64 +0.2
180,051 + GFF2745 0.64 -0.7
180,051 + GFF2745 0.64 -0.9
180,051 + GFF2745 0.64 -0.4
180,051 + GFF2745 0.64 -1.3
180,051 + GFF2745 0.64 +0.8
180,052 - GFF2745 0.64 +0.0
180,052 - GFF2745 0.64 +0.1
180,052 - GFF2745 0.64 -0.1
180,052 - GFF2745 0.64 -0.9
180,052 - GFF2745 0.64 -0.2
180,052 - GFF2745 0.64 +1.2
180,052 - GFF2745 0.64 -0.2
180,093 + GFF2745 0.68 -1.9
180,094 - GFF2745 0.68 +1.2
180,094 - GFF2745 0.68 -0.1
180,094 - GFF2745 0.68 -0.3
180,094 - GFF2745 0.68 -0.3
180,094 - GFF2745 0.68 +0.9
180,094 - GFF2745 0.68 -0.8

Or see this region's nucleotide sequence