Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF261 and GFF262 are separated by 71 nucleotides GFF262 and GFF263 are separated by 196 nucleotides GFF263 and GFF264 are separated by 257 nucleotides
GFF261 - no description, at 294,034 to 294,267
GFF261
GFF262 - Phage repressor protein cI, at 294,339 to 295,055
GFF262
GFF263 - Secreted and surface protein containing fasciclin-like repeats, at 295,252 to 295,812
GFF263
GFF264 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 296,070 to 297,680
GFF264
Position (kb) 295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 294.292 kb on - strand at 294.296 kb on + strand at 294.296 kb on + strand at 294.296 kb on + strand at 294.296 kb on + strand at 294.297 kb on - strand at 294.297 kb on - strand at 294.297 kb on - strand at 294.312 kb on + strand at 294.312 kb on + strand at 294.326 kb on + strand at 294.327 kb on - strand at 294.327 kb on - strand at 294.327 kb on - strand at 294.639 kb on + strand, within GFF262 at 294.639 kb on + strand, within GFF262 at 294.639 kb on + strand, within GFF262 at 294.639 kb on + strand, within GFF262 at 294.639 kb on + strand, within GFF262 at 294.639 kb on + strand, within GFF262 at 294.639 kb on + strand, within GFF262 at 294.639 kb on + strand, within GFF262 at 294.639 kb on + strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.640 kb on - strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.774 kb on + strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.775 kb on - strand, within GFF262 at 294.832 kb on - strand, within GFF262 at 294.832 kb on - strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.939 kb on + strand, within GFF262 at 294.940 kb on - strand, within GFF262 at 294.940 kb on - strand, within GFF262 at 294.940 kb on - strand, within GFF262 at 294.940 kb on - strand, within GFF262 at 294.940 kb on - strand, within GFF262 at 294.940 kb on - strand, within GFF262 at 294.997 kb on + strand at 294.997 kb on + strand at 294.997 kb on + strand at 294.997 kb on + strand at 294.997 kb on + strand at 294.997 kb on + strand at 294.997 kb on + strand at 294.998 kb on - strand at 294.998 kb on - strand at 295.178 kb on + strand at 295.179 kb on - strand at 295.179 kb on - strand at 295.179 kb on - strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.221 kb on - strand at 295.221 kb on - strand at 295.231 kb on + strand at 295.231 kb on + strand at 295.231 kb on + strand at 295.232 kb on - strand at 295.232 kb on - strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.304 kb on + strand at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.692 kb on - strand, within GFF263 at 295.870 kb on + strand at 295.871 kb on - strand at 295.871 kb on - strand at 295.871 kb on - strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.969 kb on + strand at 295.969 kb on + strand at 295.969 kb on + strand at 295.969 kb on + strand at 295.969 kb on + strand at 295.970 kb on - strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.578 kb on - strand, within GFF264 at 296.578 kb on - strand, within GFF264 at 296.578 kb on - strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.673 kb on + strand, within GFF264 at 296.674 kb on - strand, within GFF264 at 296.691 kb on + strand, within GFF264 at 296.691 kb on + strand, within GFF264 at 296.691 kb on + strand, within GFF264 at 296.692 kb on - strand, within GFF264 at 296.692 kb on - strand, within GFF264 at 296.692 kb on - strand, within GFF264 at 296.692 kb on - strand, within GFF264
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 294,292 - +0.1 294,296 + +0.8 294,296 + -0.8 294,296 + +0.3 294,296 + +0.2 294,297 - -0.8 294,297 - -0.1 294,297 - +1.0 294,312 + -1.3 294,312 + +0.2 294,326 + +0.6 294,327 - -0.3 294,327 - -0.3 294,327 - -0.2 294,639 + GFF262 0.42 +0.3 294,639 + GFF262 0.42 +1.0 294,639 + GFF262 0.42 +1.6 294,639 + GFF262 0.42 +0.6 294,639 + GFF262 0.42 -0.3 294,639 + GFF262 0.42 -0.7 294,639 + GFF262 0.42 -0.1 294,639 + GFF262 0.42 -0.6 294,639 + GFF262 0.42 -1.7 294,640 - GFF262 0.42 -1.3 294,640 - GFF262 0.42 +0.3 294,640 - GFF262 0.42 -1.9 294,640 - GFF262 0.42 -0.5 294,640 - GFF262 0.42 +0.5 294,640 - GFF262 0.42 -0.7 294,640 - GFF262 0.42 +0.3 294,640 - GFF262 0.42 -0.7 294,640 - GFF262 0.42 -0.6 294,640 - GFF262 0.42 +0.1 294,640 - GFF262 0.42 -1.8 294,640 - GFF262 0.42 +0.3 294,640 - GFF262 0.42 +0.1 294,640 - GFF262 0.42 +0.4 294,640 - GFF262 0.42 +0.2 294,640 - GFF262 0.42 -0.9 294,640 - GFF262 0.42 -0.7 294,774 + GFF262 0.61 -0.5 294,774 + GFF262 0.61 -0.2 294,774 + GFF262 0.61 +0.4 294,774 + GFF262 0.61 -0.7 294,774 + GFF262 0.61 -0.7 294,774 + GFF262 0.61 -0.7 294,774 + GFF262 0.61 +0.6 294,774 + GFF262 0.61 -0.5 294,774 + GFF262 0.61 -0.5 294,774 + GFF262 0.61 -0.3 294,774 + GFF262 0.61 +0.0 294,774 + GFF262 0.61 -0.8 294,774 + GFF262 0.61 -0.0 294,774 + GFF262 0.61 +1.9 294,775 - GFF262 0.61 +0.2 294,775 - GFF262 0.61 -1.3 294,775 - GFF262 0.61 -0.5 294,775 - GFF262 0.61 -0.3 294,775 - GFF262 0.61 +0.7 294,775 - GFF262 0.61 -0.8 294,775 - GFF262 0.61 -1.5 294,775 - GFF262 0.61 +0.3 294,775 - GFF262 0.61 -0.5 294,775 - GFF262 0.61 +0.2 294,775 - GFF262 0.61 +0.2 294,775 - GFF262 0.61 +0.3 294,775 - GFF262 0.61 +0.4 294,832 - GFF262 0.69 +0.3 294,832 - GFF262 0.69 +0.9 294,939 + GFF262 0.84 -1.3 294,939 + GFF262 0.84 -0.6 294,939 + GFF262 0.84 +0.5 294,939 + GFF262 0.84 -1.1 294,939 + GFF262 0.84 -0.1 294,939 + GFF262 0.84 -0.3 294,939 + GFF262 0.84 -0.1 294,939 + GFF262 0.84 -0.1 294,939 + GFF262 0.84 -0.2 294,939 + GFF262 0.84 -0.1 294,939 + GFF262 0.84 +2.3 294,939 + GFF262 0.84 +1.1 294,939 + GFF262 0.84 -1.2 294,939 + GFF262 0.84 -0.5 294,940 - GFF262 0.84 -0.1 294,940 - GFF262 0.84 +0.0 294,940 - GFF262 0.84 +1.3 294,940 - GFF262 0.84 -0.3 294,940 - GFF262 0.84 -0.7 294,940 - GFF262 0.84 +0.3 294,997 + -0.1 294,997 + -1.3 294,997 + +0.3 294,997 + -0.0 294,997 + +0.1 294,997 + -0.2 294,997 + -0.1 294,998 - -0.2 294,998 - -0.4 295,178 + -0.3 295,179 - -1.9 295,179 - -0.6 295,179 - +0.2 295,220 + +0.2 295,220 + -0.0 295,220 + +0.5 295,220 + -0.6 295,220 + -0.3 295,220 + -1.4 295,221 - -0.3 295,221 - -0.4 295,231 + +0.3 295,231 + +0.2 295,231 + +0.3 295,232 - -0.1 295,232 - -0.2 295,253 + +0.4 295,253 + -0.0 295,253 + -1.0 295,253 + -0.2 295,253 + -1.0 295,253 + -1.0 295,253 + -0.3 295,253 + -0.2 295,253 + -0.3 295,253 + +0.0 295,253 + -0.2 295,253 + +0.3 295,253 + +1.3 295,253 + +1.6 295,253 + +0.1 295,254 - -0.7 295,254 - -0.6 295,254 - +0.3 295,254 - -0.4 295,254 - +2.0 295,254 - +0.5 295,254 - +0.2 295,254 - -0.2 295,254 - -0.7 295,254 - +0.7 295,254 - +0.4 295,304 + -1.3 295,484 + GFF263 0.41 +0.3 295,484 + GFF263 0.41 -0.9 295,484 + GFF263 0.41 -1.3 295,484 + GFF263 0.41 -0.1 295,484 + GFF263 0.41 -0.7 295,484 + GFF263 0.41 -0.1 295,484 + GFF263 0.41 -0.3 295,485 - GFF263 0.42 +0.3 295,485 - GFF263 0.42 -0.5 295,485 - GFF263 0.42 -0.3 295,485 - GFF263 0.42 -0.6 295,485 - GFF263 0.42 -1.5 295,485 - GFF263 0.42 +0.4 295,485 - GFF263 0.42 -0.7 295,485 - GFF263 0.42 +1.9 295,485 - GFF263 0.42 -1.0 295,485 - GFF263 0.42 -0.1 295,485 - GFF263 0.42 -0.5 295,485 - GFF263 0.42 -0.5 295,485 - GFF263 0.42 +0.5 295,485 - GFF263 0.42 -1.2 295,692 - GFF263 0.78 -0.8 295,870 + -0.0 295,871 - +0.5 295,871 - +0.1 295,871 - -0.2 295,966 + -1.3 295,966 + +0.0 295,966 + -0.5 295,966 + +0.3 295,966 + -1.9 295,966 + -0.5 295,967 - -1.2 295,967 - -0.8 295,967 - -3.6 295,967 - +0.2 295,967 - +1.6 295,967 - -0.7 295,967 - +0.1 295,967 - +0.3 295,967 - -0.2 295,969 + +0.6 295,969 + -0.1 295,969 + -0.8 295,969 + -1.4 295,969 + +0.1 295,970 - -0.5 296,055 + -0.2 296,055 + -1.5 296,055 + -0.6 296,055 + -1.2 296,055 + -1.0 296,055 + -0.7 296,055 + -1.3 296,055 + +0.8 296,055 + -0.1 296,055 + -0.3 296,055 + -0.5 296,055 + -0.0 296,056 - -0.4 296,056 - -0.2 296,056 - -0.0 296,056 - -1.6 296,056 - +0.1 296,056 - +0.4 296,056 - +0.4 296,256 + GFF264 0.12 -0.0 296,256 + GFF264 0.12 -1.0 296,256 + GFF264 0.12 +0.0 296,256 + GFF264 0.12 -0.5 296,256 + GFF264 0.12 -0.3 296,256 + GFF264 0.12 +0.2 296,257 - GFF264 0.12 -1.0 296,257 - GFF264 0.12 +0.6 296,257 - GFF264 0.12 +0.1 296,257 - GFF264 0.12 -0.5 296,257 - GFF264 0.12 -0.1 296,257 - GFF264 0.12 -1.7 296,257 - GFF264 0.12 -0.9 296,257 - GFF264 0.12 -1.7 296,257 - GFF264 0.12 +0.2 296,257 - GFF264 0.12 -0.3 296,463 + GFF264 0.24 +1.5 296,463 + GFF264 0.24 +0.5 296,463 + GFF264 0.24 +0.2 296,463 + GFF264 0.24 +0.1 296,463 + GFF264 0.24 +0.1 296,463 + GFF264 0.24 -0.0 296,463 + GFF264 0.24 +0.1 296,463 + GFF264 0.24 -0.5 296,463 + GFF264 0.24 +0.3 296,463 + GFF264 0.24 -0.6 296,463 + GFF264 0.24 +0.9 296,464 - GFF264 0.24 -0.2 296,464 - GFF264 0.24 -1.5 296,464 - GFF264 0.24 -0.3 296,464 - GFF264 0.24 -0.3 296,464 - GFF264 0.24 -0.5 296,464 - GFF264 0.24 -0.3 296,577 + GFF264 0.31 -0.4 296,577 + GFF264 0.31 +0.3 296,577 + GFF264 0.31 +0.3 296,577 + GFF264 0.31 -0.6 296,577 + GFF264 0.31 -0.5 296,577 + GFF264 0.31 +0.6 296,577 + GFF264 0.31 +0.4 296,578 - GFF264 0.32 -1.0 296,578 - GFF264 0.32 -0.3 296,578 - GFF264 0.32 -0.1 296,601 + GFF264 0.33 -0.8 296,601 + GFF264 0.33 -0.3 296,601 + GFF264 0.33 -0.2 296,601 + GFF264 0.33 -0.1 296,601 + GFF264 0.33 -0.4 296,601 + GFF264 0.33 +0.3 296,601 + GFF264 0.33 +0.8 296,601 + GFF264 0.33 +0.0 296,601 + GFF264 0.33 +0.1 296,602 - GFF264 0.33 -0.6 296,602 - GFF264 0.33 -0.2 296,602 - GFF264 0.33 -0.1 296,602 - GFF264 0.33 +0.2 296,602 - GFF264 0.33 -0.7 296,602 - GFF264 0.33 -1.0 296,673 + GFF264 0.37 +1.1 296,674 - GFF264 0.37 +0.4 296,691 + GFF264 0.39 +0.2 296,691 + GFF264 0.39 +0.3 296,691 + GFF264 0.39 -0.4 296,692 - GFF264 0.39 -0.6 296,692 - GFF264 0.39 -1.5 296,692 - GFF264 0.39 +0.1 296,692 - GFF264 0.39 -0.7
Or see this region's nucleotide sequence