Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2418 and GFF2419 are separated by 36 nucleotides GFF2419 and GFF2420 are separated by 23 nucleotides GFF2420 and GFF2421 are separated by 13 nucleotides
GFF2418 - BUG/TctC family periplasmic protein, at 469,441 to 470,430
GFF2418
GFF2419 - putative amidase, at 470,467 to 471,843
GFF2419
GFF2420 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 471,867 to 472,622
GFF2420
GFF2421 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 472,636 to 473,397
GFF2421
Position (kb) 470
471
472 Strain fitness (log2 ratio) -1
0
1 at 469.652 kb on + strand, within GFF2418 at 469.781 kb on + strand, within GFF2418 at 469.781 kb on + strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.995 kb on - strand, within GFF2418 at 470.012 kb on + strand, within GFF2418 at 470.108 kb on + strand, within GFF2418 at 470.108 kb on + strand, within GFF2418 at 470.150 kb on + strand, within GFF2418 at 470.309 kb on + strand, within GFF2418 at 470.510 kb on + strand at 470.618 kb on + strand, within GFF2419 at 470.624 kb on + strand, within GFF2419 at 470.624 kb on + strand, within GFF2419 at 470.625 kb on - strand, within GFF2419 at 470.625 kb on - strand, within GFF2419 at 470.926 kb on + strand, within GFF2419 at 470.927 kb on - strand, within GFF2419 at 470.927 kb on - strand, within GFF2419 at 471.228 kb on - strand, within GFF2419 at 471.253 kb on + strand, within GFF2419 at 471.560 kb on + strand, within GFF2419 at 471.560 kb on + strand, within GFF2419 at 471.561 kb on - strand, within GFF2419 at 471.561 kb on - strand, within GFF2419 at 471.859 kb on + strand at 471.859 kb on + strand at 472.275 kb on + strand, within GFF2420 at 472.685 kb on + strand at 472.685 kb on + strand at 472.709 kb on + strand at 472.709 kb on + strand at 472.710 kb on - strand at 472.811 kb on + strand, within GFF2421
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 469,652 + GFF2418 0.21 -0.5 469,781 + GFF2418 0.34 -0.5 469,781 + GFF2418 0.34 -0.4 469,782 - GFF2418 0.34 -0.8 469,782 - GFF2418 0.34 +0.2 469,782 - GFF2418 0.34 -0.7 469,994 + GFF2418 0.56 -0.4 469,994 + GFF2418 0.56 -1.7 469,994 + GFF2418 0.56 +0.2 469,995 - GFF2418 0.56 -0.1 470,012 + GFF2418 0.58 -0.3 470,108 + GFF2418 0.67 -1.4 470,108 + GFF2418 0.67 +0.6 470,150 + GFF2418 0.72 +0.0 470,309 + GFF2418 0.88 +0.8 470,510 + -0.5 470,618 + GFF2419 0.11 -0.1 470,624 + GFF2419 0.11 -0.1 470,624 + GFF2419 0.11 +0.4 470,625 - GFF2419 0.11 -0.2 470,625 - GFF2419 0.11 -1.3 470,926 + GFF2419 0.33 +1.0 470,927 - GFF2419 0.33 -1.0 470,927 - GFF2419 0.33 +0.1 471,228 - GFF2419 0.55 +0.0 471,253 + GFF2419 0.57 -0.0 471,560 + GFF2419 0.79 -0.4 471,560 + GFF2419 0.79 +0.9 471,561 - GFF2419 0.79 -0.1 471,561 - GFF2419 0.79 +0.6 471,859 + -0.5 471,859 + +0.5 472,275 + GFF2420 0.54 +1.2 472,685 + -0.4 472,685 + +0.2 472,709 + -0.5 472,709 + +0.4 472,710 - +0.4 472,811 + GFF2421 0.23 +1.6
Or see this region's nucleotide sequence