Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2323 and GFF2324 are separated by 23 nucleotides GFF2324 and GFF2325 are separated by 31 nucleotides
GFF2323 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 374,058 to 375,056
GFF2323
GFF2324 - Lactam utilization protein LamB, at 375,080 to 375,814
GFF2324
GFF2325 - Methyl-accepting chemotaxis sensor/transducer protein, at 375,846 to 377,537
GFF2325
Position (kb) 375
376 Strain fitness (log2 ratio) -1
0
1 at 375.000 kb on + strand at 375.001 kb on - strand at 375.001 kb on - strand at 375.001 kb on - strand at 375.054 kb on + strand at 375.054 kb on + strand at 375.054 kb on + strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.329 kb on + strand, within GFF2324 at 375.329 kb on + strand, within GFF2324 at 375.330 kb on - strand, within GFF2324 at 375.330 kb on - strand, within GFF2324 at 375.330 kb on - strand, within GFF2324 at 375.407 kb on + strand, within GFF2324 at 375.407 kb on + strand, within GFF2324 at 375.407 kb on + strand, within GFF2324 at 375.407 kb on + strand, within GFF2324 at 375.408 kb on - strand, within GFF2324 at 375.408 kb on - strand, within GFF2324 at 375.408 kb on - strand, within GFF2324 at 375.408 kb on - strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.573 kb on - strand, within GFF2324 at 375.573 kb on - strand, within GFF2324 at 375.573 kb on - strand, within GFF2324 at 376.310 kb on - strand, within GFF2325
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 375,000 + -0.4 375,001 - -0.0 375,001 - -0.2 375,001 - -0.7 375,054 + -0.4 375,054 + +0.9 375,054 + +0.8 375,055 - +0.5 375,055 - -0.4 375,055 - -1.1 375,055 - -1.4 375,055 - -0.7 375,329 + GFF2324 0.34 -1.0 375,329 + GFF2324 0.34 -0.3 375,330 - GFF2324 0.34 -0.7 375,330 - GFF2324 0.34 -0.8 375,330 - GFF2324 0.34 -1.1 375,407 + GFF2324 0.44 -1.0 375,407 + GFF2324 0.44 -0.9 375,407 + GFF2324 0.44 -0.0 375,407 + GFF2324 0.44 +0.9 375,408 - GFF2324 0.45 -0.5 375,408 - GFF2324 0.45 +0.3 375,408 - GFF2324 0.45 -0.5 375,408 - GFF2324 0.45 -0.1 375,572 + GFF2324 0.67 -0.4 375,572 + GFF2324 0.67 -0.4 375,572 + GFF2324 0.67 -0.8 375,572 + GFF2324 0.67 -0.0 375,572 + GFF2324 0.67 +0.4 375,572 + GFF2324 0.67 +0.6 375,572 + GFF2324 0.67 +0.6 375,573 - GFF2324 0.67 -0.8 375,573 - GFF2324 0.67 -1.2 375,573 - GFF2324 0.67 -1.1 376,310 - GFF2325 0.27 -0.2
Or see this region's nucleotide sequence