Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2269 and GFF2270 are separated by 5 nucleotides GFF2270 and GFF2271 are separated by 14 nucleotides GFF2271 and GFF2272 are separated by 43 nucleotides GFF2272 and GFF2273 are separated by 132 nucleotides
GFF2269 - Uncharacterized MFS-type transporter, at 323,347 to 324,813
GFF2269
GFF2270 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 324,819 to 325,238
GFF2270
GFF2271 - FIG00454722: hypothetical protein, at 325,253 to 325,780
GFF2271
GFF2272 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 325,824 to 326,267
GFF2272
GFF2273 - Transcriptional regulator, AcrR family, at 326,400 to 327,053
GFF2273
Position (kb) 325
326 Strain fitness (log2 ratio) -2
-1
0
1 at 324.272 kb on + strand, within GFF2269 at 324.273 kb on - strand, within GFF2269 at 324.273 kb on - strand, within GFF2269 at 324.273 kb on - strand, within GFF2269 at 324.593 kb on + strand, within GFF2269 at 324.594 kb on - strand, within GFF2269 at 324.594 kb on - strand, within GFF2269 at 324.647 kb on + strand, within GFF2269 at 324.647 kb on + strand, within GFF2269 at 324.648 kb on - strand, within GFF2269 at 324.648 kb on - strand, within GFF2269 at 324.648 kb on - strand, within GFF2269 at 324.648 kb on - strand, within GFF2269 at 324.820 kb on + strand at 325.015 kb on + strand, within GFF2270 at 325.016 kb on - strand, within GFF2270 at 325.016 kb on - strand, within GFF2270 at 325.016 kb on - strand, within GFF2270 at 325.022 kb on + strand, within GFF2270 at 325.178 kb on - strand, within GFF2270 at 325.220 kb on - strand at 325.390 kb on + strand, within GFF2271 at 325.390 kb on + strand, within GFF2271 at 325.390 kb on + strand, within GFF2271 at 325.391 kb on - strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.542 kb on + strand, within GFF2271 at 325.543 kb on - strand, within GFF2271 at 325.608 kb on + strand, within GFF2271 at 325.608 kb on + strand, within GFF2271 at 325.608 kb on + strand, within GFF2271 at 325.609 kb on - strand, within GFF2271 at 326.167 kb on + strand, within GFF2272 at 326.209 kb on + strand, within GFF2272 at 326.209 kb on + strand, within GFF2272 at 326.209 kb on + strand, within GFF2272 at 326.209 kb on + strand, within GFF2272 at 326.209 kb on + strand, within GFF2272 at 326.209 kb on + strand, within GFF2272 at 326.210 kb on - strand, within GFF2272 at 326.210 kb on - strand, within GFF2272 at 326.210 kb on - strand, within GFF2272 at 326.251 kb on + strand at 326.251 kb on + strand at 326.251 kb on + strand at 326.251 kb on + strand at 326.252 kb on - strand at 326.252 kb on - strand at 326.252 kb on - strand at 326.252 kb on - strand at 326.363 kb on + strand at 326.364 kb on - strand at 326.574 kb on + strand, within GFF2273 at 326.574 kb on + strand, within GFF2273 at 326.574 kb on + strand, within GFF2273 at 326.575 kb on - strand, within GFF2273 at 326.575 kb on - strand, within GFF2273 at 326.733 kb on + strand, within GFF2273 at 326.733 kb on + strand, within GFF2273 at 326.734 kb on - strand, within GFF2273
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 324,272 + GFF2269 0.63 -1.0 324,273 - GFF2269 0.63 +0.5 324,273 - GFF2269 0.63 -0.2 324,273 - GFF2269 0.63 -0.5 324,593 + GFF2269 0.85 -0.2 324,594 - GFF2269 0.85 -0.3 324,594 - GFF2269 0.85 +0.9 324,647 + GFF2269 0.89 +0.4 324,647 + GFF2269 0.89 +0.2 324,648 - GFF2269 0.89 -0.6 324,648 - GFF2269 0.89 -2.5 324,648 - GFF2269 0.89 -0.8 324,648 - GFF2269 0.89 -0.5 324,820 + +0.2 325,015 + GFF2270 0.47 +0.1 325,016 - GFF2270 0.47 -0.3 325,016 - GFF2270 0.47 -1.2 325,016 - GFF2270 0.47 +0.8 325,022 + GFF2270 0.48 -0.6 325,178 - GFF2270 0.85 -0.8 325,220 - -0.8 325,390 + GFF2271 0.26 +0.6 325,390 + GFF2271 0.26 -0.6 325,390 + GFF2271 0.26 -0.6 325,391 - GFF2271 0.26 -0.9 325,542 + GFF2271 0.55 -0.9 325,542 + GFF2271 0.55 +0.5 325,542 + GFF2271 0.55 -1.9 325,542 + GFF2271 0.55 +0.2 325,542 + GFF2271 0.55 -0.4 325,542 + GFF2271 0.55 -0.6 325,542 + GFF2271 0.55 -0.7 325,542 + GFF2271 0.55 -0.4 325,542 + GFF2271 0.55 -0.4 325,542 + GFF2271 0.55 -0.2 325,543 - GFF2271 0.55 -0.1 325,608 + GFF2271 0.67 -0.7 325,608 + GFF2271 0.67 +0.6 325,608 + GFF2271 0.67 -0.7 325,609 - GFF2271 0.67 -0.9 326,167 + GFF2272 0.77 -0.3 326,209 + GFF2272 0.87 +0.4 326,209 + GFF2272 0.87 -1.2 326,209 + GFF2272 0.87 +0.0 326,209 + GFF2272 0.87 +0.3 326,209 + GFF2272 0.87 -0.9 326,209 + GFF2272 0.87 -0.5 326,210 - GFF2272 0.87 +0.3 326,210 - GFF2272 0.87 -0.4 326,210 - GFF2272 0.87 +0.5 326,251 + -0.4 326,251 + -0.5 326,251 + -1.7 326,251 + +0.8 326,252 - -0.6 326,252 - -0.3 326,252 - -0.8 326,252 - -0.7 326,363 + +0.4 326,364 - +0.3 326,574 + GFF2273 0.27 -0.6 326,574 + GFF2273 0.27 -0.4 326,574 + GFF2273 0.27 +0.3 326,575 - GFF2273 0.27 -1.0 326,575 - GFF2273 0.27 -0.4 326,733 + GFF2273 0.51 -0.6 326,733 + GFF2273 0.51 -0.4 326,734 - GFF2273 0.51 +0.1
Or see this region's nucleotide sequence